RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 CXCL10P02778 98 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 CDC27P30260 824 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 HOXC8P31273 242 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 RFC2P35250 354 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 EXOSC10Q01780 885 aaKnown RBP12.58□□□□□ -0.4
SYNE2-227ENST00000557307 FUT2Q10981 343 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 BFSP2Q13515 415 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 WWC2Q6AWC2 1192 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 APOA5Q6Q788 366 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 SGMS1Q86VZ5 419 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 HERC6Q8IVU3 1022 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 SAMD3Q8N6K7 520 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 SMARCC2Q8TAQ2 1214 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 CAGE1Q8TC20 777 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 MTA3Q9BTC8 594 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 MLXIPQ9HAP2 919 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 SLC28A3Q9HAS3 691 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 FAM217BQ9NTX9 383 aaPredicted RBP12.58□□□□□ -0.4
SYNE2-227ENST00000557307 PKD2L1Q9P0L9 805 aa12.58□□□□□ -0.4
SYNE2-227ENST00000557307 PRRC2BQ5JSZ5 2229 aaKnown RBP12.58□□□□□ -0.4
SYNE2-227ENST00000557307 COL4A6Q14031 1691 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 PIK3CDO00329 1044 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 SMIM10L2AP0DMW4 78 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 SMIM10L2BP0DMW5 78 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 KCNA2P16389 499 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 ITGB5P18084 799 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 IGFBP4P22692 258 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 KIF5BP33176 963 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 TAP1Q03518 808 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 PTK7Q13308 1070 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 UTP14CQ5TAP6 766 aaKnown RBP12.57□□□□□ -0.4
SYNE2-227ENST00000557307 PCNX4Q63HM2 1172 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 FANCBQ8NB91 859 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 ZBTB10Q96DT7 871 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 NEK1Q96PY6 1258 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 SLC9A7Q96T83 725 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 GAS2L1Q99501 681 aaPredicted RBP12.57□□□□□ -0.4
SYNE2-227ENST00000557307 KATNAL1Q9BW62 490 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 RNPEPQ9H4A4 650 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 SEC63Q9UGP8 760 aaKnown RBP12.57□□□□□ -0.4
SYNE2-227ENST00000557307 SLC12A7Q9Y666 1083 aa12.57□□□□□ -0.4
SYNE2-227ENST00000557307 H3BRB1 525 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 FIBPO43427 364 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 PPFIA4O75335 1185 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 CDC45O75419 566 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 CTSHP09668 335 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 TGFB3P10600 412 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 SMARCA1P28370 1054 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 MKRN4PQ13434 485 aaPredicted RBP12.56□□□□□ -0.4
SYNE2-227ENST00000557307 GNPTABQ3T906 1256 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 KCNV1Q6PIU1 500 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 METTL7BQ6UX53 244 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.56□□□□□ -0.4
SYNE2-227ENST00000557307 HEATR3Q7Z4Q2 680 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 SERINC5Q86VE9 423 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 MICALL1Q8N3F8 863 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 CCDC155Q8N6L0 562 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 TUT1Q9H6E5 874 aaKnown RBP12.56□□□□□ -0.4
SYNE2-227ENST00000557307 SETD4Q9NVD3 440 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 TMEM260Q9NX78 707 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 RALGAPA2Q2PPJ7 1873 aa12.56□□□□□ -0.4
SYNE2-227ENST00000557307 GSTTP1A0A1W2PQM5 241 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 C17orf102A2RUQ5 167 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 ACTN1P12814 892 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 TRAF1Q13077 416 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 FAM117BQ6P1L5 589 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 CNKSR3Q6P9H4 555 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 RUFY4Q6ZNE9 571 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 CYP2W1Q8TAV3 490 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 LMBR1Q8WVP7 490 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 ARNTL2Q8WYA1 636 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 CUL5Q93034 780 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 LZTS2Q9BRK4 669 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 PSTPIP2Q9H939 334 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 PCDHA6Q9UN73 950 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 PCDHA8Q9Y5H6 950 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 UBIAD1Q9Y5Z9 338 aa12.55□□□□□ -0.4
SYNE2-227ENST00000557307 KLF18A0A0U1RQI7 1052 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 STXBP3O00186 592 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 NOP56O00567 594 aaKnown RBP12.54□□□□□ -0.4
SYNE2-227ENST00000557307 LPXNO60711 386 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 PPFIA3O75145 1194 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 BAIAP3O94812 1187 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 CALM1P0DP23 149 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 CALM2P0DP24 149 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 CALM3P0DP25 149 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 TCF7P36402 384 aaPredicted RBP12.54□□□□□ -0.4
SYNE2-227ENST00000557307 THPOP40225 353 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 GNAQP50148 359 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 ADAM17P78536 824 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 APOBRQ0VD83 1088 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 DHX32Q7L7V1 743 aaKnown RBP12.54□□□□□ -0.4
SYNE2-227ENST00000557307 DBF4BQ8NFT6 615 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 ATP6V0A1Q93050 837 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 PCYT2Q99447 389 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 SNX14Q9Y5W7 946 aa12.54□□□□□ -0.4
SYNE2-227ENST00000557307 GOLGA8AA7E2F4 631 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 GOLGA8BA8MQT2 603 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 ZBTB43O43298 467 aa12.53□□□□□ -0.4
SYNE2-227ENST00000557307 LGR5O75473 907 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms