RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 ECHS1P30084 290 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 HSD17B3P37058 310 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 EHHADHQ08426 723 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 IFFO1Q0D2I5 559 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 KCNMA1Q12791 1236 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 SNCBQ16143 134 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 SLC18A3Q16572 532 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 TDRD12Q587J7 1177 aaKnown RBP8.02□□□□□ -1.12
USP48-206ENST00000464577 PNMA1Q8ND90 353 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 TAF4BQ92750 862 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 PBKQ96KB5 322 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 LRRC27Q9C0I9 530 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 ZMYND12Q9H0C1 365 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 CD248Q9HCU0 757 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 SLC39A2Q9NP94 309 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 MAD2L2Q9UI95 211 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 CLEC11AQ9Y240 323 aa8.02□□□□□ -1.12
USP48-206ENST00000464577 ROBO3Q96MS0 1386 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 MYMKA6NI61 221 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 NTSR2O95665 410 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 FTCDO95954 541 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 GHRP10912 638 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 KLRC1P26715 233 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 ELF1P32519 619 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 GYG1P46976 350 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 ERVK-9P63128 1117 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 PPP2R2AP63151 447 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 ZNF844Q08AG5 666 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 GRB10Q13322 594 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 UAP1Q16222 522 aaPredicted RBP8.02□□□□□ -1.13
USP48-206ENST00000464577 SLC35G1Q2M3R5 365 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 CAVIN4Q5BKX8 364 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 ANKRD20A8PQ5CZ79 823 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 FAM83BQ5T0W9 1011 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 C10orf76Q5T2E6 689 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 HEATR3Q7Z4Q2 680 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 NEK8Q86SG6 692 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 STAG2Q8N3U4 1231 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 ACTRT1Q8TDG2 376 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 SCFD2Q8WU76 684 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 NSUN4Q96CB9 384 aaKnown RBP8.02□□□□□ -1.13
USP48-206ENST00000464577 CCDC114Q96M63 670 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 CEP63Q96MT8 703 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 BLOC1S4Q9NUP1 217 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 DDX20Q9UHI6 824 aaKnown RBP8.02□□□□□ -1.13
USP48-206ENST00000464577 MYH10P35580 1976 aa8.02□□□□□ -1.13
USP48-206ENST00000464577 ATAD5Q96QE3 1844 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 PALM3A6NDB9 673 aaPredicted RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 CCNT1O60563 726 aaKnown RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 NOL4O94818 638 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 GNA14O95837 355 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 CYP2D6P10635 497 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 NF2P35240 595 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 USP11P51784 963 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 MARSP56192 900 aaKnown RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 SEPT2Q15019 361 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 RPS6KA1Q15418 735 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 IFI16Q16666 785 aaKnown RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 ZCWPW2Q504Y3 356 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 SPDYCQ5MJ68 293 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 CYB5D1Q6P9G0 228 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 TMC4Q7Z404 712 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 PARP9Q8IXQ6 854 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 FUKQ8N0W3 1084 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 TATDN2Q93075 761 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 HPS3Q969F9 1004 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 SGSM3Q96HU1 749 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 PNMA5Q96PV4 448 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 SPZ1Q9BXG8 430 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 AIPL1Q9NZN9 384 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 COL4A3BPQ9Y5P4 624 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 COL4A1P02462 1669 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 STRCP1A6NGW2 1772 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 CCDC188H7C350 402 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 CYTH3O43739 400 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 DNAJC8O75937 253 aaPredicted RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 KIF4AO95239 1232 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 ANXA13P27216 316 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 GNA11P29992 359 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 HPDP32754 393 aaPredicted RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 TECP42680 631 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 MRPL12P52815 198 aaKnown RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 FKBP3Q00688 224 aaKnown RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 TFAP4Q01664 338 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 MECOMQ03112 1051 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 XRCC4Q13426 336 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 HLTFQ14527 1009 aaKnown RBP eCLIP8.01□□□□□ -1.13
USP48-206ENST00000464577 LETM2Q2VYF4 491 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 CACNA2D3Q8IZS8 1091 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 LARP4BQ92615 738 aaKnown RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 RAD54LQ92698 747 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 SEC16BQ96JE7 1060 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 LSM14BQ9BX40 385 aaKnown RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 OSBPL7Q9BZF2 842 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 KDM4CQ9H3R0 1056 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 CNOT10Q9H9A5 744 aaKnown RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 C6orf50Q9HD87 102 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 PPANQ9NQ55 473 aaKnown RBP8.01□□□□□ -1.13
USP48-206ENST00000464577 IL17RBQ9NRM6 502 aa8.01□□□□□ -1.13
USP48-206ENST00000464577 SUFUQ9UMX1 484 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms