RNA–Protein interactions for RNA: YMR123W

PKR1, Transcript of V-ATPase assembly factor, yeast

Gene PKR1, Length 369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PKR1	YMR123W	ADH2	P00331	348 aa	Known RBP	2.34	□□□□□ -2.03
PKR1	YMR123W	SAM1	P10659	382 aa	Known RBP	2.34	□□□□□ -2.03
PKR1	YMR123W	SAM2	P19358	384 aa	Known RBP	2.34	□□□□□ -2.03
PKR1	YMR123W	TIP1	P27654	210 aa	Predicted RBP	2.34	□□□□□ -2.03
PKR1	YMR123W	PMT1	P33775	817 aa		2.34	□□□□□ -2.03
PKR1	YMR123W	THI2	P38141	450 aa		2.34	□□□□□ -2.03
PKR1	YMR123W	CCT2	P39076	527 aa	Known RBP	2.34	□□□□□ -2.03
PKR1	YMR123W	PRM5	P40476	318 aa		2.34	□□□□□ -2.03
PKR1	YMR123W	VMA13	P41807	478 aa	Known RBP	2.34	□□□□□ -2.03
PKR1	YMR123W	HXT14	P42833	540 aa		2.34	□□□□□ -2.03
PKR1	YMR123W	YGR149W	P48236	432 aa		2.34	□□□□□ -2.03
PKR1	YMR123W	RMD9	P53140	646 aa	Known RBP	2.34	□□□□□ -2.03
PKR1	YMR123W	JJJ1	P53863	590 aa		2.34	□□□□□ -2.03
PKR1	YMR123W	RPT6	Q01939	405 aa	Known RBP	2.34	□□□□□ -2.03
PKR1	YMR123W	HER2	Q03557	464 aa		2.34	□□□□□ -2.03
PKR1	YMR123W	RQC1	Q05468	723 aa	Known RBP	2.34	□□□□□ -2.03
PKR1	YMR123W	HRI1	Q05905	244 aa	Known RBP	2.34	□□□□□ -2.03
PKR1	YMR123W	SOD1	P00445	154 aa	Known RBP	2.33	□□□□□ -2.04
PKR1	YMR123W	ARG3	P05150	338 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	PET123	P17558	318 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	RVS161	P25343	265 aa	Known RBP	2.33	□□□□□ -2.04
PKR1	YMR123W	AFG1	P32317	509 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	ECM25	P32525	599 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	PRS1	P32895	427 aa	Known RBP	2.33	□□□□□ -2.04
PKR1	YMR123W	SWE1	P32944	819 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	NIP100	P33420	868 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	PIM1	P36775	1133 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	RIB5	P38145	238 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	UTP9	P38882	575 aa	Known RBP	2.33	□□□□□ -2.04
PKR1	YMR123W	TIS11	P47977	285 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	PCP1	P53259	346 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	DSL1	P53847	754 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	TIM10	P87108	93 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	GIR2	Q03768	265 aa	Predicted RBP	2.33	□□□□□ -2.04
PKR1	YMR123W	PKH2	Q12236	1081 aa	Known RBP	2.33	□□□□□ -2.04
PKR1	YMR123W	YML133C	Q03099	1374 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	YLL067C	Q07888	1374 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	YLL066C	Q99208	1374 aa		2.33	□□□□□ -2.04
PKR1	YMR123W	SIN3	P22579	1536 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	GPH1	P06738	902 aa	Known RBP	2.32	□□□□□ -2.04
PKR1	YMR123W	SPS4	P09937	338 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	DAL2	P25335	343 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	GPI10	P30777	616 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	PRP21	P32524	280 aa	Predicted RBP	2.32	□□□□□ -2.04
PKR1	YMR123W	PAN6	P40459	309 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	ARF3	P40994	183 aa	RIP-Chip data	2.32	□□□□□ -2.04	not detected
PKR1	YMR123W	LAM5	P43560	674 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	VTC2	P43585	828 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	NCA3	P46955	337 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	ECM27	P47144	725 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	MDG1	P53885	366 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	KTR5	P53966	522 aa	Predicted RBP	2.32	□□□□□ -2.04
PKR1	YMR123W	YMR181C	Q03231	154 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	YMR027W	Q04371	470 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	HSP31	Q04432	237 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	YDL121C	Q07541	149 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	TIM18	Q08749	192 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	RIM20	Q12033	661 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	MED1	Q12321	566 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	RRI2	Q12348	645 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	UFD4	P33202	1483 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	SSK2	P53599	1579 aa		2.32	□□□□□ -2.04
PKR1	YMR123W	HIS4	P00815	799 aa	Known RBP	2.31	□□□□□ -2.04
PKR1	YMR123W	IDH2	P28241	369 aa	Known RBP	2.31	□□□□□ -2.04
PKR1	YMR123W	MSG5	P38590	489 aa		2.31	□□□□□ -2.04
PKR1	YMR123W	SHY1	P53266	389 aa		2.31	□□□□□ -2.04
PKR1	YMR123W	HXT11	P54862	567 aa		2.31	□□□□□ -2.04
PKR1	YMR123W	RSN1	Q03516	953 aa		2.31	□□□□□ -2.04
PKR1	YMR123W	FDH1	Q08911	376 aa		2.31	□□□□□ -2.04
PKR1	YMR123W	YPR022C	Q12139	1133 aa		2.31	□□□□□ -2.04
PKR1	YMR123W	GRX6	Q12438	231 aa		2.31	□□□□□ -2.04
PKR1	YMR123W	YLR278C	Q05854	1341 aa		2.31	□□□□□ -2.04
PKR1	YMR123W	SSN2	P38931	1420 aa		2.31	□□□□□ -2.04
PKR1	YMR123W	RIP1	P08067	215 aa		2.3	□□□□□ -2.04
PKR1	YMR123W	NAT1	P12945	854 aa	Known RBP	2.3	□□□□□ -2.04
PKR1	YMR123W	ITR1	P30605	584 aa		2.3	□□□□□ -2.04
PKR1	YMR123W	APE2	P32454	952 aa	Known RBP	2.3	□□□□□ -2.04
PKR1	YMR123W	MTM1	P53320	366 aa		2.3	□□□□□ -2.04
PKR1	YMR123W	YNR048W	P53740	393 aa		2.3	□□□□□ -2.04
PKR1	YMR123W	PPM1	Q04081	328 aa		2.3	□□□□□ -2.04
PKR1	YMR123W	YDR387C	Q04162	555 aa		2.3	□□□□□ -2.04
PKR1	YMR123W	SGT1	Q08446	395 aa		2.3	□□□□□ -2.04
PKR1	YMR123W	WTM1	Q12363	437 aa	Known RBP	2.3	□□□□□ -2.04
PKR1	YMR123W	LTE1	P07866	1435 aa		2.3	□□□□□ -2.04
PKR1	YMR123W	MYO2	P19524	1574 aa	Known RBP	2.29	□□□□□ -2.04
PKR1	YMR123W	SCC2	Q04002	1493 aa		2.29	□□□□□ -2.04
PKR1	YMR123W	RPS8A	P0CX39	200 aa	Known RBP	2.29	□□□□□ -2.04
PKR1	YMR123W	RPS8B	P0CX40	200 aa	Known RBP	2.29	□□□□□ -2.04
PKR1	YMR123W	MRP7	P12687	371 aa		2.29	□□□□□ -2.04
PKR1	YMR123W	YBR137W	P38276	179 aa		2.29	□□□□□ -2.04
PKR1	YMR123W	SMF1	P38925	575 aa		2.29	□□□□□ -2.04
PKR1	YMR123W	IRC6	P43615	237 aa		2.29	□□□□□ -2.04
PKR1	YMR123W	DNF1	P32660	1571 aa		2.28	□□□□□ -2.04
PKR1	YMR123W	CHD1	P32657	1468 aa		2.28	□□□□□ -2.04
PKR1	YMR123W	MET5	P47169	1442 aa		2.28	□□□□□ -2.04
PKR1	YMR123W	TRP1	P00912	224 aa		2.28	□□□□□ -2.04
PKR1	YMR123W	ARG4	P04076	463 aa	Predicted RBP	2.28	□□□□□ -2.04
PKR1	YMR123W	TOP1	P04786	769 aa		2.28	□□□□□ -2.04
PKR1	YMR123W	SEC63	P14906	663 aa		2.28	□□□□□ -2.04
PKR1	YMR123W	RPI1	P23250	407 aa	Known RBP	2.28	□□□□□ -2.04

Retrieved 100 of 5,963 RNA–protein pairs in 25 ms