RNA–Protein interactions for RNA: YJL178C

ATG27, Transcript of Type I membrane protein involved in autophagy and the Cvt pathway, yeast

Gene ATG27, Length 816 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG27	YJL178C	SUE1	Q06524	206 aa		3.21	□□□□□ -1.9
ATG27	YJL178C	YOL075C	Q08234	1294 aa		3.21	□□□□□ -1.9
ATG27	YJL178C	YOR365C	Q08844	703 aa		3.21	□□□□□ -1.9
ATG27	YJL178C	KEL3	Q08979	651 aa	Predicted RBP	3.21	□□□□□ -1.9
ATG27	YJL178C	GCN4	P03069	281 aa		3.2	□□□□□ -1.9
ATG27	YJL178C	SAM2	P19358	384 aa	Known RBP	3.2	□□□□□ -1.9
ATG27	YJL178C	BUD14	P27637	709 aa		3.2	□□□□□ -1.9
ATG27	YJL178C	WBP1	P33767	430 aa	Known RBP	3.2	□□□□□ -1.9
ATG27	YJL178C	YKT6	P36015	200 aa	Known RBP	3.2	□□□□□ -1.9
ATG27	YJL178C	NDT80	P38830	627 aa		3.2	□□□□□ -1.9
ATG27	YJL178C	ROK1	P45818	564 aa	Predicted RBP	3.2	□□□□□ -1.9
ATG27	YJL178C	PET130	P47065	347 aa		3.2	□□□□□ -1.9
ATG27	YJL178C	YGL138C	P53122	345 aa		3.2	□□□□□ -1.9
ATG27	YJL178C	RLI1	Q03195	608 aa	Known RBP	3.2	□□□□□ -1.9
ATG27	YJL178C	ERP1	Q05359	219 aa	Known RBP	3.2	□□□□□ -1.9
ATG27	YJL178C	YDR341C	Q05506	607 aa	Known RBP	3.2	□□□□□ -1.9
ATG27	YJL178C	MMR1	Q06324	491 aa		3.2	□□□□□ -1.9
ATG27	YJL178C	AVL9	Q12500	764 aa		3.2	□□□□□ -1.9
ATG27	YJL178C	HIS4	P00815	799 aa	Known RBP	3.19	□□□□□ -1.9
ATG27	YJL178C	ARG3	P05150	338 aa		3.19	□□□□□ -1.9
ATG27	YJL178C	RPL15A	P05748	204 aa	Known RBP	3.19	□□□□□ -1.9
ATG27	YJL178C	MTF1	P14908	341 aa	Known RBP	3.19	□□□□□ -1.9
ATG27	YJL178C	CPR3	P25719	182 aa		3.19	□□□□□ -1.9
ATG27	YJL178C	LOS1	P33418	1100 aa	Predicted RBP	3.19	□□□□□ -1.9
ATG27	YJL178C	SIP2	P34164	415 aa	Known RBP	3.19	□□□□□ -1.9
ATG27	YJL178C	YET1	P35723	206 aa		3.19	□□□□□ -1.9
ATG27	YJL178C	KEL1	P38853	1164 aa	Known RBP	3.19	□□□□□ -1.9
ATG27	YJL178C	TIF4631	P39935	952 aa	Known RBP	3.19	□□□□□ -1.9
ATG27	YJL178C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	3.19	□□□□□ -1.9	not detected
ATG27	YJL178C	RTT101	P47050	842 aa		3.19	□□□□□ -1.9
ATG27	YJL178C	YGR066C	P53242	292 aa		3.19	□□□□□ -1.9
ATG27	YJL178C	RBG2	P53295	368 aa	Known RBP	3.19	□□□□□ -1.9
ATG27	YJL178C	TOF2	Q02208	771 aa		3.19	□□□□□ -1.9
ATG27	YJL178C	SLD5	Q03406	294 aa		3.19	□□□□□ -1.9
ATG27	YJL178C	YDR239C	Q03780	787 aa		3.19	□□□□□ -1.9
ATG27	YJL178C	UBX2	Q04228	584 aa		3.19	□□□□□ -1.9
ATG27	YJL178C	SMD2	Q06217	110 aa	Known RBP	3.19	□□□□□ -1.9
ATG27	YJL178C	THP1	Q08231	455 aa		3.19	□□□□□ -1.9
ATG27	YJL178C	RRG1	Q12167	365 aa	Predicted RBP	3.19	□□□□□ -1.9
ATG27	YJL178C	FOB1	O13329	566 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	PRP16	P15938	1071 aa	Predicted RBP	3.18	□□□□□ -1.9
ATG27	YJL178C	ALG1	P16661	449 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	BMH1	P29311	267 aa	Known RBP	3.18	□□□□□ -1.9
ATG27	YJL178C	PSO2	P30620	661 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	NDC1	P32500	655 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	YME1	P32795	747 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	MSN2	P33748	704 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	SHP1	P34223	423 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	RPC25	P35718	212 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	EBP2	P36049	427 aa	Known RBP	3.18	□□□□□ -1.9
ATG27	YJL178C	TCM62	P38228	572 aa	Known RBP	3.18	□□□□□ -1.9
ATG27	YJL178C	NDE1	P40215	560 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	MET28	P40573	187 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	AIP1	P46680	615 aa	Known RBP	3.18	□□□□□ -1.9
ATG27	YJL178C	YJR154W	P47181	346 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	YDL186W	P48568	277 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	MDM1	Q01846	1127 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	GRX6	Q12438	231 aa		3.18	□□□□□ -1.9
ATG27	YJL178C	SUC2	P00724	532 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	CAR1	P00812	333 aa	Known RBP	3.17	□□□□□ -1.9
ATG27	YJL178C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.17	□□□□□ -1.9	not detected
ATG27	YJL178C	AMD1	P15274	810 aa	Known RBP	3.17	□□□□□ -1.9
ATG27	YJL178C	PHO13	P19881	312 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	YCR022C	P25620	114 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	FRE1	P32791	686 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	PTR2	P32901	601 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	DUG2	P38149	878 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	BNA4	P38169	460 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	YBL028C	P38202	106 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	SEC9	P40357	651 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	YJL213W	P40896	331 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	RMD8	P43620	662 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	CAF130	P53280	1122 aa	Predicted RBP	3.17	□□□□□ -1.9
ATG27	YJL178C	ZPR1	P53303	486 aa	Known RBP	3.17	□□□□□ -1.9
ATG27	YJL178C	TRM44	Q02648	567 aa	Known RBP	3.17	□□□□□ -1.9
ATG27	YJL178C	EBS1	Q03466	884 aa	Known RBP	3.17	□□□□□ -1.9
ATG27	YJL178C	AIM33	Q04516	312 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	PHO92	Q06390	306 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	SYO1	Q07395	620 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	NBL1	Q3E7Y6	73 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	TUS1	Q06412	1307 aa		3.17	□□□□□ -1.9
ATG27	YJL178C	CDC37	P06101	506 aa	Known RBP	3.16	□□□□□ -1.9
ATG27	YJL178C	MET17	P06106	444 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	COR1	P07256	457 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	THR4	P16120	514 aa	Known RBP	3.16	□□□□□ -1.9
ATG27	YJL178C	SPO12	P17123	173 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	PET123	P17558	318 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	PRP2	P20095	876 aa	Predicted RBP	3.16	□□□□□ -1.9
ATG27	YJL178C	ISY1	P21374	235 aa	Predicted RBP	3.16	□□□□□ -1.9
ATG27	YJL178C	YCR007C	P25354	239 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	OCA4	P25366	362 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	SPC110	P32380	944 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	CST26	P38226	397 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	YHR218W	P38899	603 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	SPT8	P38915	602 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	KRE9	P39005	276 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	GAA1	P39012	614 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	RPH1	P39956	796 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	ESL1	P40456	1118 aa		3.16	□□□□□ -1.9
ATG27	YJL178C	ALK1	P43633	760 aa	Known RBP	3.16	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms