RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W WSS1P38838 269 aa3.15□□□□□ -1.91
UPF3YGR072W DHH1P39517 506 aaKnown RBP3.15□□□□□ -1.91
UPF3YGR072W FAU1P40099 211 aa3.15□□□□□ -1.91
UPF3YGR072W YMR147WP40218 223 aaKnown RBP3.15□□□□□ -1.91
UPF3YGR072W EFM4P40516 257 aa3.15□□□□□ -1.91
UPF3YGR072W SCD6P45978 349 aaKnown RBP RIP-Chip data3.15□□□□□ -1.91 RIP-Chip
UPF3YGR072W YJR011CP47086 261 aaPredicted RBP3.15□□□□□ -1.91
UPF3YGR072W YGR016WP53209 190 aa3.15□□□□□ -1.91
UPF3YGR072W IRC15Q02733 499 aa3.15□□□□□ -1.91
UPF3YGR072W MRPL51Q06090 140 aaPredicted RBP3.15□□□□□ -1.91
UPF3YGR072W YLL032CQ07834 825 aaKnown RBP RIP-Chip data3.15□□□□□ -1.91not detected
UPF3YGR072W SMF3Q12078 473 aaPredicted RBP3.15□□□□□ -1.91
UPF3YGR072W HIS4P00815 799 aaKnown RBP3.14□□□□□ -1.91
UPF3YGR072W LPD1P09624 499 aaKnown RBP3.14□□□□□ -1.91
UPF3YGR072W NAT1P12945 854 aaKnown RBP3.14□□□□□ -1.91
UPF3YGR072W PMR1P13586 950 aa3.14□□□□□ -1.91
UPF3YGR072W RPI1P23250 407 aaKnown RBP3.14□□□□□ -1.91
UPF3YGR072W APE2P32454 952 aaKnown RBP3.14□□□□□ -1.91
UPF3YGR072W ERG1P32476 496 aaKnown RBP3.14□□□□□ -1.91
UPF3YGR072W ANP1P32629 500 aa3.14□□□□□ -1.91
UPF3YGR072W DAD2P36162 133 aa3.14□□□□□ -1.91
UPF3YGR072W OLA1P38219 394 aaKnown RBP3.14□□□□□ -1.91
UPF3YGR072W ZTA1P38230 334 aaKnown RBP3.14□□□□□ -1.91
UPF3YGR072W VHS2P40463 436 aa3.14□□□□□ -1.91
UPF3YGR072W YIR014WP40570 242 aa3.14□□□□□ -1.91
UPF3YGR072W AZF1P41696 914 aa3.14□□□□□ -1.91
UPF3YGR072W ECM27P47144 725 aa3.14□□□□□ -1.91
UPF3YGR072W TOM22P49334 152 aa3.14□□□□□ -1.91
UPF3YGR072W BTN2P53286 410 aa3.14□□□□□ -1.91
UPF3YGR072W YIF1P53845 314 aaKnown RBP3.14□□□□□ -1.91
UPF3YGR072W YDR387CQ04162 555 aa3.14□□□□□ -1.91
UPF3YGR072W REX4Q08237 289 aa3.14□□□□□ -1.91
UPF3YGR072W KEL3Q08979 651 aaPredicted RBP3.14□□□□□ -1.91
UPF3YGR072W YDR061WQ12298 539 aa3.14□□□□□ -1.91
UPF3YGR072W FRE6Q12473 712 aa3.14□□□□□ -1.91
UPF3YGR072W SCEIP03882 235 aa3.13□□□□□ -1.91
UPF3YGR072W YAR066WP0CX18 203 aa3.13□□□□□ -1.91
UPF3YGR072W YHR214WP0CX19 203 aa3.13□□□□□ -1.91
UPF3YGR072W BUB3P26449 341 aa3.13□□□□□ -1.91
UPF3YGR072W RIM1P32445 135 aaKnown RBP3.13□□□□□ -1.91
UPF3YGR072W DPH2P32461 534 aa3.13□□□□□ -1.91
UPF3YGR072W HEL1P36113 551 aa3.13□□□□□ -1.91
UPF3YGR072W RRN10P38204 145 aa3.13□□□□□ -1.91
UPF3YGR072W KEL1P38853 1164 aaKnown RBP3.13□□□□□ -1.91
UPF3YGR072W SER3P40054 469 aa3.13□□□□□ -1.91
UPF3YGR072W SAS2P40963 338 aa3.13□□□□□ -1.91
UPF3YGR072W DIM1P41819 318 aaKnown RBP3.13□□□□□ -1.91
UPF3YGR072W MLC1P53141 149 aa3.13□□□□□ -1.91
UPF3YGR072W PIB2P53191 635 aa3.13□□□□□ -1.91
UPF3YGR072W PNG1Q02890 363 aa3.13□□□□□ -1.91
UPF3YGR072W PPM1Q04081 328 aa3.13□□□□□ -1.91
UPF3YGR072W BNA5Q05979 453 aa3.13□□□□□ -1.91
UPF3YGR072W YLR456WQ06199 204 aa3.13□□□□□ -1.91
UPF3YGR072W SYO1Q07395 620 aa3.13□□□□□ -1.91
UPF3YGR072W BSC1Q12140 328 aa3.13□□□□□ -1.91
UPF3YGR072W YDL009CQ12210 107 aa3.13□□□□□ -1.91
UPF3YGR072W RUP1Q12242 671 aa3.13□□□□□ -1.91
UPF3YGR072W TY1B-AO13527 1196 aaKnown RBP3.12□□□□□ -1.91
UPF3YGR072W CDC23P16522 626 aa3.12□□□□□ -1.91
UPF3YGR072W KRR1P25586 316 aaPredicted RBP3.12□□□□□ -1.91
UPF3YGR072W CRM1P30822 1084 aaKnown RBP3.12□□□□□ -1.91
UPF3YGR072W FRE1P32791 686 aa3.12□□□□□ -1.91
UPF3YGR072W ASC1P38011 319 aaKnown RBP3.12□□□□□ -1.91
UPF3YGR072W RFC3P38629 340 aa3.12□□□□□ -1.91
UPF3YGR072W BZZ1P38822 633 aa3.12□□□□□ -1.91
UPF3YGR072W FAD1P38913 306 aa3.12□□□□□ -1.91
UPF3YGR072W CCT2P39076 527 aaKnown RBP3.12□□□□□ -1.91
UPF3YGR072W ISC1P40015 477 aaKnown RBP3.12□□□□□ -1.91
UPF3YGR072W EPL1P43572 832 aa3.12□□□□□ -1.91
UPF3YGR072W GUF1P46943 645 aa3.12□□□□□ -1.91
UPF3YGR072W RHO5P53879 331 aaKnown RBP3.12□□□□□ -1.91
UPF3YGR072W YPL107WQ02873 248 aa3.12□□□□□ -1.91
UPF3YGR072W TIP41Q12199 356 aa3.12□□□□□ -1.91
UPF3YGR072W CSR2Q12734 1121 aa3.12□□□□□ -1.91
UPF3YGR072W SEC63P14906 663 aa3.11□□□□□ -1.91
UPF3YGR072W GLN3P18494 730 aa3.11□□□□□ -1.91
UPF3YGR072W PHO84P25297 587 aaKnown RBP3.11□□□□□ -1.91
UPF3YGR072W GEX1P25596 615 aa3.11□□□□□ -1.91
UPF3YGR072W MSP1P28737 362 aa3.11□□□□□ -1.91
UPF3YGR072W HSP104P31539 908 aaKnown RBP3.11□□□□□ -1.91
UPF3YGR072W ECM25P32525 599 aa3.11□□□□□ -1.91
UPF3YGR072W FRE2P36033 711 aa3.11□□□□□ -1.91
UPF3YGR072W LAS1P36146 502 aaPredicted RBP3.11□□□□□ -1.91
UPF3YGR072W RIM2P38127 377 aa3.11□□□□□ -1.91
UPF3YGR072W PCP1P53259 346 aa3.11□□□□□ -1.91
UPF3YGR072W OCA2P53949 197 aa3.11□□□□□ -1.91
UPF3YGR072W GIP3Q03016 1276 aa3.11□□□□□ -1.91
UPF3YGR072W PRP42Q03776 544 aaKnown RBP3.11□□□□□ -1.91
UPF3YGR072W RPN9Q04062 393 aaKnown RBP3.11□□□□□ -1.91
UPF3YGR072W RBA50Q04418 439 aa3.11□□□□□ -1.91
UPF3YGR072W MDM30Q05930 598 aa3.11□□□□□ -1.91
UPF3YGR072W MUM3Q08750 479 aa3.11□□□□□ -1.91
UPF3YGR072W YLL056CQ12177 298 aa3.11□□□□□ -1.91
UPF3YGR072W NFI1Q12216 726 aa3.11□□□□□ -1.91
UPF3YGR072W RRD2Q12461 358 aa3.11□□□□□ -1.91
UPF3YGR072W CYB2P00175 591 aa3.1□□□□□ -1.91
UPF3YGR072W ADE4P04046 510 aaKnown RBP3.1□□□□□ -1.91
UPF3YGR072W AMD1P15274 810 aaKnown RBP3.1□□□□□ -1.91
UPF3YGR072W YCR100CP25606 316 aa3.1□□□□□ -1.91
UPF3YGR072W SMY1P32364 656 aaKnown RBP3.1□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 10.1 ms