RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	ERG26	P53199	349 aa	Known RBP	3.83	□□□□□ -1.8
UBX5	YDR330W	RPA49	Q01080	415 aa	Predicted RBP	3.83	□□□□□ -1.8
UBX5	YDR330W	FMP30	Q02883	468 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	SLD5	Q03406	294 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	PPM1	Q04081	328 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	AIM32	Q04689	311 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	TEN1	Q07921	160 aa		3.83	□□□□□ -1.8
UBX5	YDR330W	MAK32	P23060	363 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	YCR006C	P25350	157 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	YKL100C	P34248	587 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	CSG2	P35206	410 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	GDT1	P38301	280 aa	Predicted RBP	3.82	□□□□□ -1.8
UBX5	YDR330W	STB2	P46679	850 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	DLD2	P46681	530 aa	Known RBP	3.82	□□□□□ -1.8
UBX5	YDR330W	NMD5	P46970	1048 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	CPR7	P47103	393 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	SHE10	P53075	577 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	YGR111W	P53265	400 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	SLI1	P53304	468 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	YNL146W	P53906	100 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	YMR321C	Q04898	105 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	YDR222W	Q04925	415 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	YDR278C	Q05612	105 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	3.82	□□□□□ -1.8	not detected
UBX5	YDR330W	AFI1	Q99222	893 aa		3.82	□□□□□ -1.8
UBX5	YDR330W	ARG4	P04076	463 aa	Predicted RBP	3.81	□□□□□ -1.8
UBX5	YDR330W	ARG81	P05085	880 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	RPS3	P05750	240 aa	Known RBP	3.81	□□□□□ -1.8
UBX5	YDR330W	CHO1	P08456	276 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	NAT1	P12945	854 aa	Known RBP	3.81	□□□□□ -1.8
UBX5	YDR330W	MNE1	P24720	663 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	TFB1	P32776	642 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	MDL1	P33310	695 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	HCS1	P34243	683 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	MSR1	P38714	643 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	END3	P39013	349 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	YIL089W	P40500	205 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	CDC1	P40986	491 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	ZIM17	P42844	174 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	PHO86	P46956	311 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	YJL055W	P47044	245 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	DRN1	P53255	507 aa	Known RBP	3.81	□□□□□ -1.8
UBX5	YDR330W	RPL22B	P56628	122 aa	Known RBP	3.81	□□□□□ -1.8
UBX5	YDR330W	YMR102C	Q03177	834 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	SNU56	Q03782	492 aa	Known RBP	3.81	□□□□□ -1.8
UBX5	YDR330W	ROY1	Q04847	553 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	ECM30	Q06673	1274 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	YOL159C	Q08300	171 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	HIF1	Q12373	385 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	GIS3	Q12418	502 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	AI5_BETA	Q9ZZX0	354 aa		3.81	□□□□□ -1.8
UBX5	YDR330W	RPL3	P14126	387 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.8	□□□□□ -1.8	not detected
UBX5	YDR330W	BUD5	P25300	642 aa	Predicted RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	YUR1	P26725	428 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	RME1	P32338	300 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	DPH2	P32461	534 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	RPL32	P38061	130 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	MRX3	P38172	270 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	TIF5	P38431	405 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	IMD2	P38697	523 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	CCT2	P39076	527 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	ERV46	P39727	415 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	GDI1	P39958	451 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	CIN1	P40987	1014 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	3.8	□□□□□ -1.8	not detected
UBX5	YDR330W	IMD3	P50095	523 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	CUL3	P53202	744 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	UTP6	Q02354	440 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	KAP120	Q02932	1032 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	ARX1	Q03862	593 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	RPC11	Q04307	110 aa	Predicted RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	ERV41	Q04651	352 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	PDR8	Q06149	701 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	ECM7	Q06200	448 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	BSP1	Q06604	576 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	MCH4	Q08268	501 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	PDH1	Q12428	516 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	YDL007C-A	Q2V2Q0	85 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	ECM29	P38737	1868 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	LAA1	P39526	2014 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	MOT1	P32333	1867 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	PEP5	P12868	1029 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	APE1	P14904	514 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	CPR2	P23285	205 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	CLB2	P24869	491 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	RRT12	P25381	491 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	BUD14	P27637	709 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	URA7	P28274	579 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	MIA40	P36046	403 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	MSG5	P38590	489 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	ANS1	P38832	159 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	SMX2	P40204	77 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	INA22	P40576	216 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	TRS85	P46944	698 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	SCS3	P53012	380 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	TPO3	Q06451	622 aa		3.8	□□□□□ -1.8
UBX5	YDR330W	ABP140	Q08641	628 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	PAR32	Q12515	295 aa	Known RBP	3.8	□□□□□ -1.8
UBX5	YDR330W	SEY1	Q99287	776 aa		3.8	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 28.3 ms