RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 DHX38Q92620 1227 aaKnown RBP18.6■□□□□ 0.57
CLN3-229ENST00000567963 ZFP91Q96JP5 570 aaPredicted RBP18.6■□□□□ 0.57
CLN3-229ENST00000567963 SPATA33Q96N06 139 aa18.6■□□□□ 0.57
CLN3-229ENST00000567963 SLC9A7Q96T83 725 aa18.6■□□□□ 0.57
CLN3-229ENST00000567963 MTA3Q9BTC8 594 aa18.6■□□□□ 0.57
CLN3-229ENST00000567963 REV3LO60673 3130 aa18.6■□□□□ 0.57
CLN3-229ENST00000567963 SORBS3O60504 671 aa18.59■□□□□ 0.57
CLN3-229ENST00000567963 SELPP16109 830 aa18.59■□□□□ 0.57
CLN3-229ENST00000567963 IGFBP4P22692 258 aa18.59■□□□□ 0.57
CLN3-229ENST00000567963 RBL2Q08999 1139 aa18.59■□□□□ 0.57
CLN3-229ENST00000567963 CASC1Q6TDU7 716 aa18.59■□□□□ 0.57
CLN3-229ENST00000567963 ZNF654Q8IZM8 581 aa18.59■□□□□ 0.57
CLN3-229ENST00000567963 PIBF1Q8WXW3 757 aa18.59■□□□□ 0.57
CLN3-229ENST00000567963 GPKOWQ92917 476 aaPredicted RBP eCLIP18.59■□□□□ 0.57
CLN3-229ENST00000567963 SPZ1Q9BXG8 430 aa18.59■□□□□ 0.57
CLN3-229ENST00000567963 LSG1Q9H089 658 aaKnown RBP18.59■□□□□ 0.57
CLN3-229ENST00000567963 MUC3AQ02505 3323 aa18.59■□□□□ 0.57
CLN3-229ENST00000567963 DDAH1O94760 285 aa18.58■□□□□ 0.57
CLN3-229ENST00000567963 BAIAP3O94812 1187 aa18.58■□□□□ 0.57
CLN3-229ENST00000567963 PARNO95453 639 aaKnown RBP18.58■□□□□ 0.57
CLN3-229ENST00000567963 CKBP12277 381 aa18.58■□□□□ 0.57
CLN3-229ENST00000567963 UBA1P22314 1058 aaKnown RBP18.58■□□□□ 0.57
CLN3-229ENST00000567963 SMARCA1P28370 1054 aa18.58■□□□□ 0.57
CLN3-229ENST00000567963 LRRC8DQ7L1W4 858 aa18.58■□□□□ 0.57
CLN3-229ENST00000567963 CTCFLQ8NI51 663 aaPredicted RBP18.58■□□□□ 0.57
CLN3-229ENST00000567963 MYL10Q9BUA6 226 aa18.58■□□□□ 0.57
CLN3-229ENST00000567963 MLXIPQ9HAP2 919 aa18.58■□□□□ 0.57
CLN3-229ENST00000567963 PRDM6Q9NQX0 595 aa18.58■□□□□ 0.57
CLN3-229ENST00000567963 XIRP2A4UGR9 3374 aa18.58■□□□□ 0.57
CLN3-229ENST00000567963 PRC1O43663 620 aa18.58■□□□□ 0.56
CLN3-229ENST00000567963 CA3P07451 260 aa18.58■□□□□ 0.56
CLN3-229ENST00000567963 KIF5BP33176 963 aa18.58■□□□□ 0.56
CLN3-229ENST00000567963 MCM5P33992 734 aa18.58■□□□□ 0.56
CLN3-229ENST00000567963 MRPS9P82933 396 aaKnown RBP18.58■□□□□ 0.56
CLN3-229ENST00000567963 PTK7Q13308 1070 aa18.58■□□□□ 0.56
CLN3-229ENST00000567963 CCDC85BQ15834 202 aaPredicted RBP18.58■□□□□ 0.56
CLN3-229ENST00000567963 TMTC2Q8N394 836 aa18.58■□□□□ 0.56
CLN3-229ENST00000567963 SYMPKQ92797 1274 aaKnown RBP18.58■□□□□ 0.56
CLN3-229ENST00000567963 RRP36Q96EU6 259 aaKnown RBP18.58■□□□□ 0.56
CLN3-229ENST00000567963 C16orf70Q9BSU1 422 aa18.58■□□□□ 0.56
CLN3-229ENST00000567963 FRMPD4Q14CM0 1322 aa18.57■□□□□ 0.56
CLN3-229ENST00000567963 TRANK1O15050 2925 aa18.57■□□□□ 0.56
CLN3-229ENST00000567963 STAM2O75886 525 aa18.57■□□□□ 0.56
CLN3-229ENST00000567963 ZNF200P98182 395 aaPredicted RBP18.57■□□□□ 0.56
CLN3-229ENST00000567963 GNPTABQ3T906 1256 aa18.57■□□□□ 0.56
CLN3-229ENST00000567963 HERC6Q8IVU3 1022 aa18.57■□□□□ 0.56
CLN3-229ENST00000567963 TMEM87BQ96K49 555 aa18.57■□□□□ 0.56
CLN3-229ENST00000567963 INPP4AQ96PE3 977 aaPredicted RBP18.57■□□□□ 0.56
CLN3-229ENST00000567963 LZTS2Q9BRK4 669 aa18.57■□□□□ 0.56
CLN3-229ENST00000567963 ESYT1Q9BSJ8 1104 aa18.57■□□□□ 0.56
CLN3-229ENST00000567963 BCAS3Q9H6U6 928 aa18.57■□□□□ 0.56
CLN3-229ENST00000567963 KIF28PB7ZC32 967 aa18.56■□□□□ 0.56
CLN3-229ENST00000567963 SLC27A2O14975 620 aa18.56■□□□□ 0.56
CLN3-229ENST00000567963 NBNO60934 754 aa18.56■□□□□ 0.56
CLN3-229ENST00000567963 CXCL10P02778 98 aa18.56■□□□□ 0.56
CLN3-229ENST00000567963 ICAM3P32942 547 aa18.56■□□□□ 0.56
CLN3-229ENST00000567963 COL9A3Q14050 684 aaPredicted RBP18.56■□□□□ 0.56
CLN3-229ENST00000567963 HIC1Q14526 733 aa18.56■□□□□ 0.56
CLN3-229ENST00000567963 NECTIN1Q15223 517 aa18.56■□□□□ 0.56
CLN3-229ENST00000567963 TRIM71Q2Q1W2 868 aaKnown RBP18.56■□□□□ 0.56
CLN3-229ENST00000567963 TJAP1Q5JTD0 557 aa18.56■□□□□ 0.56
CLN3-229ENST00000567963 NFXL1Q6ZNB6 911 aa18.56■□□□□ 0.56
CLN3-229ENST00000567963 RTEL1Q9NZ71 1219 aa18.56■□□□□ 0.56
CLN3-229ENST00000567963 CCDC69A6NI79 296 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 SPATA31C2B4DYI2 1134 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 H3BRB1 525 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 PIK3CDO00329 1044 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 SH2B2O14492 632 aaPredicted RBP18.55■□□□□ 0.56
CLN3-229ENST00000567963 MEIS2O14770 477 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 LIFRP42702 1097 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 KCNJ6P48051 423 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 GNAQP50148 359 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 ZNF618Q5T7W0 954 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 CNKSR3Q6P9H4 555 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 TRAF7Q6Q0C0 670 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 USP17L6PQ6QN14 398 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 SRBD1Q8N5C6 995 aaKnown RBP18.55■□□□□ 0.56
CLN3-229ENST00000567963 SMARCC2Q8TAQ2 1214 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 ATXN2LQ8WWM7 1075 aaKnown RBP18.55■□□□□ 0.56
CLN3-229ENST00000567963 CUL5Q93034 780 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 WNT8BQ93098 351 aa18.55■□□□□ 0.56
CLN3-229ENST00000567963 TUT1Q9H6E5 874 aaKnown RBP18.55■□□□□ 0.56
CLN3-229ENST00000567963 SEC63Q9UGP8 760 aaKnown RBP18.55■□□□□ 0.56
CLN3-229ENST00000567963 PLEKHA8P1O95397 391 aa18.54■□□□□ 0.56
CLN3-229ENST00000567963 WDR5P61964 334 aaKnown RBP18.54■□□□□ 0.56
CLN3-229ENST00000567963 SEMA3FQ13275 785 aa18.54■□□□□ 0.56
CLN3-229ENST00000567963 NEDD9Q14511 834 aa18.54■□□□□ 0.56
CLN3-229ENST00000567963 CREB3L3Q68CJ9 461 aa18.54■□□□□ 0.56
CLN3-229ENST00000567963 CMTR1Q8N1G2 835 aaKnown RBP18.54■□□□□ 0.56
CLN3-229ENST00000567963 USP26Q9BXU7 913 aa18.54■□□□□ 0.56
CLN3-229ENST00000567963 CERS4Q9HA82 394 aa18.54■□□□□ 0.56
CLN3-229ENST00000567963 PTPRSQ13332 1948 aa18.54■□□□□ 0.56
CLN3-229ENST00000567963 NOP56O00567 594 aaKnown RBP18.53■□□□□ 0.56
CLN3-229ENST00000567963 FIBPO43427 364 aa18.53■□□□□ 0.56
CLN3-229ENST00000567963 LGALS2P05162 132 aa18.53■□□□□ 0.56
CLN3-229ENST00000567963 CALM1P0DP23 149 aa18.53■□□□□ 0.56
CLN3-229ENST00000567963 CALM2P0DP24 149 aa18.53■□□□□ 0.56
CLN3-229ENST00000567963 CALM3P0DP25 149 aa18.53■□□□□ 0.56
CLN3-229ENST00000567963 RXRAP19793 462 aa18.53■□□□□ 0.56
CLN3-229ENST00000567963 TAP1Q03518 808 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms