RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 WDR11Q9BZH6 1224 aa19.52■□□□□ 0.72
LIME1-208ENST00000493265 DDX25Q9UHL0 483 aaKnown RBP19.52■□□□□ 0.72
LIME1-208ENST00000493265 PCDHB6Q9Y5E3 794 aa19.52■□□□□ 0.72
LIME1-208ENST00000493265 MCM3APO60318 1980 aa19.52■□□□□ 0.71
LIME1-208ENST00000493265 LRRC37A2A6NM11 1700 aa19.51■□□□□ 0.71
LIME1-208ENST00000493265 LOC102724159A0A0B4J2E5 919 aa19.51■□□□□ 0.71
LIME1-208ENST00000493265 ITGB5P18084 799 aa19.51■□□□□ 0.71
LIME1-208ENST00000493265 PWP2Q15269 919 aaKnown RBP19.51■□□□□ 0.71
LIME1-208ENST00000493265 CEP55Q53EZ4 464 aa19.51■□□□□ 0.71
LIME1-208ENST00000493265 RILPL1Q5EBL4 403 aa19.51■□□□□ 0.71
LIME1-208ENST00000493265 NLRX1Q86UT6 975 aa19.51■□□□□ 0.71
LIME1-208ENST00000493265 TRMT44Q8IYL2 757 aaKnown RBP19.51■□□□□ 0.71
LIME1-208ENST00000493265 MSL3Q8N5Y2 521 aaKnown RBP19.51■□□□□ 0.71
LIME1-208ENST00000493265 MORC4Q8TE76 937 aa19.51■□□□□ 0.71
LIME1-208ENST00000493265 FTOQ9C0B1 505 aaKnown RBP eCLIP19.51■□□□□ 0.71
LIME1-208ENST00000493265 PDGFCQ9NRA1 345 aa19.51■□□□□ 0.71
LIME1-208ENST00000493265 TFIP11Q9UBB9 837 aaKnown RBP19.51■□□□□ 0.71
LIME1-208ENST00000493265 UBIAD1Q9Y5Z9 338 aa19.51■□□□□ 0.71
LIME1-208ENST00000493265 SLC37A4O43826 429 aa19.5■□□□□ 0.71
LIME1-208ENST00000493265 MARCH6O60337 910 aa19.5■□□□□ 0.71
LIME1-208ENST00000493265 EVI5O60447 810 aa19.5■□□□□ 0.71
LIME1-208ENST00000493265 SORBS3O60504 671 aa19.5■□□□□ 0.71
LIME1-208ENST00000493265 ARP10275 920 aa19.5■□□□□ 0.71
LIME1-208ENST00000493265 NCLP19338 710 aaKnown RBP19.5■□□□□ 0.71
LIME1-208ENST00000493265 TRAPPC10P48553 1259 aa19.5■□□□□ 0.71
LIME1-208ENST00000493265 ACVR2BQ13705 512 aa19.5■□□□□ 0.71
LIME1-208ENST00000493265 NAP1L4Q99733 375 aaKnown RBP19.5■□□□□ 0.71
LIME1-208ENST00000493265 PRO3102Q9H379 93 aa19.5■□□□□ 0.71
LIME1-208ENST00000493265 ABHD16BQ9H3Z7 469 aa19.5■□□□□ 0.71
LIME1-208ENST00000493265 STAM2O75886 525 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 RGS20O76081 388 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 HMGCRP04035 888 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 CNGA1P29973 690 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 CIITAP33076 1130 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 MTMR1Q13613 665 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 GNPTABQ3T906 1256 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 POTEDQ86YR6 584 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 ZNF396Q96N95 335 aaPredicted RBP19.49■□□□□ 0.71
LIME1-208ENST00000493265 INPP4AQ96PE3 977 aaPredicted RBP19.49■□□□□ 0.71
LIME1-208ENST00000493265 VTA1Q9NP79 307 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 JADE2Q9NQC1 790 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 PAK6Q9NQU5 681 aaPredicted RBP19.49■□□□□ 0.71
LIME1-208ENST00000493265 CLIC4Q9Y696 253 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 MRVI1Q9Y6F6 885 aa19.49■□□□□ 0.71
LIME1-208ENST00000493265 IGLV3-22A0A075B6J6 115 aa19.48■□□□□ 0.71
LIME1-208ENST00000493265 MEIS1O00470 390 aa19.48■□□□□ 0.71
LIME1-208ENST00000493265 NEMFO60524 1076 aa19.48■□□□□ 0.71
LIME1-208ENST00000493265 PRKAR2AP13861 404 aaKnown RBP19.48■□□□□ 0.71
LIME1-208ENST00000493265 GCFC2P16383 781 aaKnown RBP19.48■□□□□ 0.71
LIME1-208ENST00000493265 ADCYAP1R1P41586 468 aa19.48■□□□□ 0.71
LIME1-208ENST00000493265 DNM1Q05193 864 aaKnown RBP19.48■□□□□ 0.71
LIME1-208ENST00000493265 CACNB2Q08289 660 aaPredicted RBP19.48■□□□□ 0.71
LIME1-208ENST00000493265 PPP4R3AQ6IN85 833 aa19.48■□□□□ 0.71
LIME1-208ENST00000493265 DIS3LQ8TF46 1054 aaKnown RBP19.48■□□□□ 0.71
LIME1-208ENST00000493265 GJA10Q969M2 543 aa19.48■□□□□ 0.71
LIME1-208ENST00000493265 PAWRQ96IZ0 340 aaKnown RBP19.48■□□□□ 0.71
LIME1-208ENST00000493265 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.48■□□□□ 0.719e-9■■■■■ 70.5
LIME1-208ENST00000493265 ATP6V1DQ9Y5K8 247 aa19.48■□□□□ 0.71
LIME1-208ENST00000493265 CYP3A7-CYP3A51PA0A087WV96 503 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 CYP3A7P24462 503 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 SF3A1Q15459 793 aaKnown RBP19.47■□□□□ 0.71
LIME1-208ENST00000493265 CALCRLQ16602 461 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 TMEM63BQ5T3F8 832 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 TAPT1Q6NXT6 567 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 MOXD1Q6UVY6 613 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 TRPV1Q8NER1 839 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 GPRASP2Q96D09 838 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 USP28Q96RU2 1077 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 KATNBL1Q9H079 304 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.47■□□□□ 0.71
LIME1-208ENST00000493265 KCNH7Q9NS40 1196 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 MYH15Q9Y2K3 1946 aa19.47■□□□□ 0.71
LIME1-208ENST00000493265 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.46■□□□□ 0.71
LIME1-208ENST00000493265 SPATA31C2B4DYI2 1134 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 FIBPO43427 364 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 IGHA2P01877 340 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 ZNF865P0CJ78 1059 aaPredicted RBP19.46■□□□□ 0.71
LIME1-208ENST00000493265 TXNP10599 105 aaKnown RBP19.46■□□□□ 0.71
LIME1-208ENST00000493265 PTGS1P23219 599 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 SETQ01105 290 aaPredicted RBP19.46■□□□□ 0.71
LIME1-208ENST00000493265 SEMA3FQ13275 785 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 LY6KQ17RY6 165 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 CCDC144BQ3MJ40 725 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 Q4G0T1 1027 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 ANO1Q5XXA6 986 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 NIPA1Q7RTP0 329 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 SCFD2Q8WU76 684 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 LENG9Q96B70 501 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 MBOAT7Q96N66 472 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 ZNF577Q9BSK1 485 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 CRISPLD2Q9H0B8 497 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 TMEM60Q9H2L4 133 aa19.46■□□□□ 0.71
LIME1-208ENST00000493265 AGO4Q9HCK5 861 aaKnown RBP19.46■□□□□ 0.71
LIME1-208ENST00000493265 DDX39AO00148 427 aaKnown RBP19.45■□□□□ 0.7
LIME1-208ENST00000493265 MSH4O15457 936 aa19.45■□□□□ 0.7
LIME1-208ENST00000493265 ARIH2O95376 493 aa19.45■□□□□ 0.7
LIME1-208ENST00000493265 CYBAP13498 195 aa19.45■□□□□ 0.7
LIME1-208ENST00000493265 CCND3P30281 292 aaPredicted RBP19.45■□□□□ 0.7
LIME1-208ENST00000493265 PTGDRQ13258 359 aa19.45■□□□□ 0.7
LIME1-208ENST00000493265 TTLL4Q14679 1199 aa19.45■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms