RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ARNTL2Q8WYA1 636 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 WNT8BQ93098 351 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 TSPYL2Q9H2G4 693 aaPredicted RBP14.41□□□□□ -0.1
CPSF3-204ENST00000489403 MAP3K20Q9NYL2 800 aaKnown RBP14.41□□□□□ -0.1
CPSF3-204ENST00000489403 PCDHA1Q9Y5I3 950 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 TCF20Q9UGU0 1960 aaKnown RBP14.41□□□□□ -0.1
CPSF3-204ENST00000489403 TRANK1O15050 2925 aa14.41□□□□□ -0.1
CPSF3-204ENST00000489403 GTPBP6O43824 516 aaPredicted RBP14.4□□□□□ -0.1
CPSF3-204ENST00000489403 SORBS3O60504 671 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 PARNO95453 639 aaKnown RBP14.4□□□□□ -0.1
CPSF3-204ENST00000489403 CYP21A2P08686 494 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 HOXD8P13378 290 aaPredicted RBP14.4□□□□□ -0.1
CPSF3-204ENST00000489403 DEFB103AP81534 67 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 ZNF200P98182 395 aaPredicted RBP14.4□□□□□ -0.1
CPSF3-204ENST00000489403 TFF2Q03403 129 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 PTK7Q13308 1070 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 GRM4Q14833 912 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 TRIM71Q2Q1W2 868 aaKnown RBP14.4□□□□□ -0.1
CPSF3-204ENST00000489403 HSDL1Q3SXM5 330 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 CELF3Q5SZQ8 465 aaKnown RBP14.4□□□□□ -0.1
CPSF3-204ENST00000489403 TTC22Q5TAA0 569 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 MYSM1Q5VVJ2 828 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 TRAF7Q6Q0C0 670 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 HOMER1Q86YM7 354 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 SAMD3Q8N6K7 520 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 IL27Q8NEV9 243 aa14.4□□□□□ -0.1
CPSF3-204ENST00000489403 PRRC2BQ5JSZ5 2229 aaKnown RBP14.39□□□□□ -0.11
CPSF3-204ENST00000489403 TTC28Q96AY4 2481 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 LCHNA4D1U4 455 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 CYTH3O43739 400 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 GGPS1O95749 300 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 UBA1P22314 1058 aaKnown RBP14.39□□□□□ -0.11
CPSF3-204ENST00000489403 SP2Q02086 613 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 PTH1RQ03431 593 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 TRDNQ13061 729 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 HIC1Q14526 733 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 SKIV2LQ15477 1246 aaKnown RBP14.39□□□□□ -0.11
CPSF3-204ENST00000489403 KCNV1Q6PIU1 500 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 VSIG10LQ86VR7 867 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 GPKOWQ92917 476 aaPredicted RBP eCLIP14.39□□□□□ -0.11
CPSF3-204ENST00000489403 ZFP91Q96JP5 570 aaPredicted RBP14.39□□□□□ -0.11
CPSF3-204ENST00000489403 SPATA33Q96N06 139 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 PIGSQ96S52 555 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 RIOX1Q9H6W3 641 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 SENP2Q9HC62 589 aa14.39□□□□□ -0.11
CPSF3-204ENST00000489403 BMP1P13497 986 aa14.38□□□□□ -0.11
CPSF3-204ENST00000489403 KCNQ1P51787 676 aa14.38□□□□□ -0.11
CPSF3-204ENST00000489403 GRB10Q13322 594 aa14.38□□□□□ -0.11
CPSF3-204ENST00000489403 ZNF618Q5T7W0 954 aa14.38□□□□□ -0.11
CPSF3-204ENST00000489403 NECAB3Q96P71 396 aaPredicted RBP14.38□□□□□ -0.11
CPSF3-204ENST00000489403 TAF6LQ9Y6J9 622 aa14.38□□□□□ -0.11
CPSF3-204ENST00000489403 U3KPZ7 1027 aaPredicted RBP14.38□□□□□ -0.11
CPSF3-204ENST00000489403 BAZ2BQ9UIF8 2168 aaKnown RBP14.38□□□□□ -0.11
CPSF3-204ENST00000489403 SIP14410 1827 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 ABHD14A-ACY1A0A1B0GW23 586 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 ERICH2A1L162 156 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 GCOM1H8Y6P7 765 aaPredicted RBP14.37□□□□□ -0.11
CPSF3-204ENST00000489403 IFIT3O14879 490 aaKnown RBP14.37□□□□□ -0.11
CPSF3-204ENST00000489403 LPXNO60711 386 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 PPFIA4O75335 1185 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 GJB5O95377 273 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 POLR2MP0CAP2 368 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 TGFB3P10600 412 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 CCND2P30279 289 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 TROAPQ12815 778 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 MBTPS1Q14703 1052 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 WTAPQ15007 396 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 AAK1Q2M2I8 961 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 FCHSD1Q86WN1 690 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 GDPD5Q8WTR4 605 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 C16orf70Q9BSU1 422 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 ZBED2Q9BTP6 218 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 MICAL3Q7RTP6 2002 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 FRMPD4Q14CM0 1322 aa14.37□□□□□ -0.11
CPSF3-204ENST00000489403 DOCK5Q9H7D0 1870 aa14.36□□□□□ -0.11
CPSF3-204ENST00000489403 PNMA6FA0A0J9YX94 578 aa14.36□□□□□ -0.11
CPSF3-204ENST00000489403 E7EWF7 191 aa14.36□□□□□ -0.11
CPSF3-204ENST00000489403 COL9A1P20849 921 aa14.36□□□□□ -0.11
CPSF3-204ENST00000489403 CHMLP26374 656 aa14.36□□□□□ -0.11
CPSF3-204ENST00000489403 TRAF1Q13077 416 aa14.36□□□□□ -0.11
CPSF3-204ENST00000489403 RALYLQ86SE5 291 aaKnown RBP14.36□□□□□ -0.11
CPSF3-204ENST00000489403 NCOA7Q8NI08 942 aa14.36□□□□□ -0.11
CPSF3-204ENST00000489403 RUFY2Q8WXA3 655 aa14.36□□□□□ -0.11
CPSF3-204ENST00000489403 BCAS3Q9H6U6 928 aa14.36□□□□□ -0.11
CPSF3-204ENST00000489403 MLXIPQ9HAP2 919 aa14.36□□□□□ -0.11
CPSF3-204ENST00000489403 EFCAB14O75071 495 aa14.35□□□□□ -0.11
CPSF3-204ENST00000489403 LGR5O75473 907 aa14.35□□□□□ -0.11
CPSF3-204ENST00000489403 HOXC8P31273 242 aa14.35□□□□□ -0.11
CPSF3-204ENST00000489403 ANTXR2P58335 489 aa14.35□□□□□ -0.11
CPSF3-204ENST00000489403 MRPS9P82933 396 aaKnown RBP14.35□□□□□ -0.11
CPSF3-204ENST00000489403 SEMA3FQ13275 785 aa14.35□□□□□ -0.11
CPSF3-204ENST00000489403 MKRN4PQ13434 485 aaPredicted RBP14.35□□□□□ -0.11
CPSF3-204ENST00000489403 IKBKEQ14164 716 aa14.35□□□□□ -0.11
CPSF3-204ENST00000489403 SERINC5Q86VE9 423 aa14.35□□□□□ -0.11
CPSF3-204ENST00000489403 RAD9AQ99638 391 aa14.35□□□□□ -0.11
CPSF3-204ENST00000489403 COG5Q9UP83 839 aa14.35□□□□□ -0.11
CPSF3-204ENST00000489403 C17orf102A2RUQ5 167 aa14.34□□□□□ -0.11
CPSF3-204ENST00000489403 LINC01553A4QN01 128 aa14.34□□□□□ -0.11
CPSF3-204ENST00000489403 SGSM2O43147 1006 aa14.34□□□□□ -0.11
CPSF3-204ENST00000489403 LGALS2P05162 132 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms