RNA–Protein interactions for RNA: ENST00000478050.1

SF3B6-202, Transcript of splicing factor 3b subunit 6, humanhuman

TSL 2

Gene SF3B6, Length 720 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-202ENST00000478050 TIGD1Q96MW7 591 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 UBL7Q96S82 380 aaPredicted RBP5.68□□□□□ -1.5
SF3B6-202ENST00000478050 STRBPQ96SI9 672 aaKnown RBP5.68□□□□□ -1.5
SF3B6-202ENST00000478050 MPHOSPH8Q99549 860 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 SDF4Q9BRK5 362 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 ALG1Q9BT22 464 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 UTP14AQ9BVJ6 771 aaKnown RBP5.68□□□□□ -1.5
SF3B6-202ENST00000478050 KRT23Q9C075 422 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 FTOQ9C0B1 505 aaKnown RBP eCLIP5.68□□□□□ -1.5
SF3B6-202ENST00000478050 MCOLN1Q9GZU1 580 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 NAPBQ9H115 298 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 C11orf16Q9NQ32 467 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 CCDC87Q9NVE4 849 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 CLIP2Q9UDT6 1046 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 PYCARDQ9ULZ3 195 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 BCS1LQ9Y276 419 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 CACNA1SQ13698 1873 aa5.68□□□□□ -1.5
SF3B6-202ENST00000478050 TAF1P21675 1872 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 LOC102724428A0A0B4J2F2 783 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 FAM237AA0A1B0GTK4 181 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 CCDC69A6NI79 296 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 SOWAHDA6NJG2 315 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 GOLGA8AA7E2F4 631 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 SMTNL1A8MU46 457 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 B4E1Z4 1266 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 J3QW42 95 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 PRMT3O60678 531 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 SLC3A2P08195 630 aaKnown RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 VEGFAP15692 232 aaPredicted RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 CMA1P23946 247 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 IGHMBP2P38935 993 aaKnown RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 IARSP41252 1262 aaKnown RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 NDUFA8P51970 172 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 RCAN1P53805 252 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 SIK1P57059 783 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 GSDMDP57764 484 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 NLRP12P59046 1061 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 GNL2Q13823 731 aaKnown RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 SLC39A14Q15043 492 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 SETDB1Q15047 1291 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 TMEM67Q5HYA8 995 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 SUSD4Q5VX71 490 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 RNF43Q68DV7 783 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 KRT40Q6A162 431 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 NFXL1Q6ZNB6 911 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 DHX40Q8IX18 779 aaKnown RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 IFNL3Q8IZI9 196 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 C17orf53Q8N3J3 647 aaPredicted RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 MAGEB6Q8N7X4 407 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 UTP4Q969X6 686 aaKnown RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 SYTL4Q96C24 671 aaPredicted RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 CDC5LQ99459 802 aaKnown RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 HINFPQ9BQA5 517 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 NACAP1Q9BZK3 213 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 MUC3BQ9H195 1237 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 RNF41Q9H4P4 317 aaPredicted RBP5.67□□□□□ -1.5
SF3B6-202ENST00000478050 LY9Q9HBG7 655 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 IMPACTQ9P2X3 320 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 ZNF652Q9Y2D9 606 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 CLIC4Q9Y696 253 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 NEDD4P46934 1319 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 DUOX1Q9NRD9 1551 aa5.67□□□□□ -1.5
SF3B6-202ENST00000478050 TNRC6CQ9HCJ0 1690 aaKnown RBP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 A0A1B0GVL5 298 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 ERICH2A1L162 156 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 KIF28PB7ZC32 967 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 IFIT3O14879 490 aaKnown RBP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 MYO1BO43795 1136 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 CUTAO60888 179 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 CAMTA2O94983 1202 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 ZNF202O95125 648 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 MBD4O95243 580 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 NTSR2O95665 410 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 POLR3DP05423 398 aaPredicted RBP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 PSAPP07602 524 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 IFNAR1P17181 557 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 GRNP28799 593 aaKnown RBP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 CRKLP46109 303 aaKnown RBP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 SOX10P56693 466 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 SSRP1Q08945 709 aaKnown RBP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 RASGRF1Q13972 1273 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 SART3Q15020 963 aaKnown RBP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 SAFBQ15424 915 aaKnown RBP eCLIP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 NTRK3Q16288 839 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 SWI5Q1ZZU3 235 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 AXDND1Q5T1B0 1012 aaPredicted RBP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 AKNAD1Q5T1N1 836 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 OTUD7BQ6GQQ9 843 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 MFSD6Q6ZSS7 791 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 MICU3Q86XE3 530 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 VPS37DQ86XT2 251 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 DTX1Q86Y01 620 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 RAB11FIP4Q86YS3 637 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 TRIM42Q8IWZ5 723 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 ELOA2Q8IYF1 753 aaPredicted RBP5.66□□□□□ -1.5
SF3B6-202ENST00000478050 SIX5Q8N196 739 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 TMTC2Q8N394 836 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 AOPEPQ8N6M6 819 aa5.66□□□□□ -1.5
SF3B6-202ENST00000478050 MARCH10Q8NA82 808 aaPredicted RBP5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms