RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 SMCO2A6NFE2 343 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 POTEB2H3BUK9 544 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 XRCC5P13010 732 aaKnown RBP10.03□□□□□ -0.8
SYNE1-214ENST00000454018 PDCP20941 246 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 NLRP5P59047 1200 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 CAP1Q01518 475 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 PRKCZQ05513 592 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 AP3B2Q13367 1082 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 PWP2Q15269 919 aaKnown RBP10.03□□□□□ -0.8
SYNE1-214ENST00000454018 MCTP2Q6DN12 878 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 DPP9Q86TI2 863 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 REXO1Q8N1G1 1221 aaKnown RBP10.03□□□□□ -0.8
SYNE1-214ENST00000454018 FAM133AQ8N9E0 248 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 DNERQ8NFT8 737 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 USP6NLQ92738 828 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 C8orf76Q96K31 380 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 PHF20Q9BVI0 1012 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 BRMS1Q9HCU9 246 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 ADD3Q9UEY8 706 aaKnown RBP10.03□□□□□ -0.8
SYNE1-214ENST00000454018 LHX6Q9UPM6 363 aa10.03□□□□□ -0.8
SYNE1-214ENST00000454018 DIS3Q9Y2L1 958 aaKnown RBP10.03□□□□□ -0.8
SYNE1-214ENST00000454018 SPDYE3A6NKU9 549 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 MEIS2O14770 477 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 DTNBO60941 627 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 MMP1P03956 469 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 HOXA13P31271 388 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-214ENST00000454018 FLT3LGP49771 235 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 BAATQ14032 418 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-214ENST00000454018 NR6A1Q15406 480 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 KRT40Q6A162 431 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 OTOP1Q7RTM1 612 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 TRMT44Q8IYL2 757 aaKnown RBP10.02□□□□□ -0.8
SYNE1-214ENST00000454018 FBXO18Q8NFZ0 1043 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 SYTL5Q8TDW5 730 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-214ENST00000454018 SHISA4Q96DD7 197 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 MPHOSPH6Q99547 160 aaKnown RBP10.02□□□□□ -0.8
SYNE1-214ENST00000454018 EHMT1Q9H9B1 1298 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 PRDM10Q9NQV6 1147 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 GJD2Q9UKL4 321 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 PCDHA4Q9UN74 947 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 TRIM17Q9Y577 477 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 FRMPD4Q14CM0 1322 aa10.02□□□□□ -0.8
SYNE1-214ENST00000454018 HTTP42858 3142 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 B4DLN1 442 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 ATP9BO43861 1147 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 COBLO75128 1261 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 FOSP01100 380 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-214ENST00000454018 PGK2P07205 417 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 SAFBQ15424 915 aaKnown RBP eCLIP10.02□□□□□ -0.81
SYNE1-214ENST00000454018 NPY5RQ15761 445 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 UBE2SQ16763 222 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 ZNF792Q3KQV3 632 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 GPR153Q6NV75 609 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 USP17L6PQ6QN14 398 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 CTU1Q7Z7A3 348 aaKnown RBP10.02□□□□□ -0.81
SYNE1-214ENST00000454018 BLIDQ8IZY5 108 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 MSL3Q8N5Y2 521 aaKnown RBP10.02□□□□□ -0.81
SYNE1-214ENST00000454018 COL20A1Q9P218 1284 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 KCNJ14Q9UNX9 436 aa10.02□□□□□ -0.81
SYNE1-214ENST00000454018 MYH9P35579 1960 aaKnown RBP10.01□□□□□ -0.81
SYNE1-214ENST00000454018 RPTORQ8N122 1335 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 SYNGAP1Q96PV0 1343 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 HOXB3P14651 431 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-214ENST00000454018 CYP2B6P20813 491 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 KRT2P35908 639 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 ALDH5A1P51649 535 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-214ENST00000454018 CNTN2Q02246 1040 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 OLFML2BQ68BL8 750 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 FCHSD1Q86WN1 690 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 RAET1EQ8TD07 263 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 NSUN6Q8TEA1 469 aaKnown RBP10.01□□□□□ -0.81
SYNE1-214ENST00000454018 TBC1D5Q92609 795 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 MAML3Q96JK9 1138 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 FGD4Q96M96 766 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 RMDN3Q96TC7 470 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 ANO3Q9BYT9 981 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 PXMP2Q9NR77 195 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 GJB4Q9NTQ9 266 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 GABRQQ9UN88 632 aa10.01□□□□□ -0.81
SYNE1-214ENST00000454018 RBM19Q9Y4C8 960 aaKnown RBP10.01□□□□□ -0.81
SYNE1-214ENST00000454018 ASTN1O14525 1302 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 ASB14A6NK59 587 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 H3BQV1 296 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 M0R2N6 131 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 PKN2Q16513 984 aaKnown RBP10□□□□□ -0.81
SYNE1-214ENST00000454018 PROX2Q3B8N5 592 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 IFFO2Q5TF58 517 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 ARHGEF16Q5VV41 709 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 LARP1BQ659C4 914 aaKnown RBP10□□□□□ -0.81
SYNE1-214ENST00000454018 MAMDC4Q6UXC1 1216 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 KRT25Q7Z3Z0 450 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 DIS3L2Q8IYB7 885 aaKnown RBP10□□□□□ -0.81
SYNE1-214ENST00000454018 NPLOC4Q8TAT6 608 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 IWS1Q96ST2 819 aa10□□□□□ -0.81
SYNE1-214ENST00000454018 BIN2Q9UBW5 565 aaPredicted RBP10□□□□□ -0.81
SYNE1-214ENST00000454018 KIAA0100Q14667 2235 aaKnown RBP9.99□□□□□ -0.81
SYNE1-214ENST00000454018 CCDC194A0A1B0GVG4 234 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 SOWAHBA6NEL2 793 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 ADCY3O60266 1144 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 HMGCRP04035 888 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms