RNA–Protein interactions for RNA: ENST00000413658.6

ZNF3-205, Transcript of zinc finger protein 3, human

TSL 1 (best) BASIC

Gene ZNF3, Length 1,441 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-205	ENST00000413658		H3BQV1	296 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	MEIS1	O00470	390 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	WNT7A	O00755	349 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	STX6	O43752	255 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	STAM2	O75886	525 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	FAM86B2	P0C5J1	330 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	CYP3A7	P24462	503 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	CIITA	P33076	1130 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	ANP32A	P39687	249 aa	Known RBP	11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	USP11	P51784	963 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	SEMA3F	Q13275	785 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	MTFR1	Q15390	333 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	INF2	Q27J81	1249 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	TMEM63B	Q5T3F8	832 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	IFFO2	Q5TF58	517 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	CCDC62	Q6P9F0	684 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	NOSTRIN	Q8IVI9	506 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	LENG9	Q96B70	501 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	MPHOSPH6	Q99547	160 aa	Known RBP	11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	RTEL1	Q9NZ71	1219 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	CNPY2	Q9Y2B0	182 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	TCHH	Q07283	1943 aa		11.71	□□□□□ -0.53
ZNF3-205	ENST00000413658	CCDC194	A0A1B0GVG4	234 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	SEPT4	O43236	478 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	ARIH2	O95376	493 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	BRD2	P25440	801 aa	Known RBP	11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	ICAM3	P32942	547 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	ADCYAP1R1	P41586	468 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	PKP1	Q13835	747 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	CCDC144B	Q3MJ40	725 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	CEP55	Q53EZ4	464 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	MBOAT7	Q96N66	472 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	MXRA8	Q9BRK3	442 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	WDR11	Q9BZH6	1224 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	UNC93B1	Q9H1C4	597 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	JADE2	Q9NQC1	790 aa		11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	PAK6	Q9NQU5	681 aa	Predicted RBP	11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	ZHX1	Q9UKY1	873 aa	Predicted RBP	11.7	□□□□□ -0.54
ZNF3-205	ENST00000413658	POTEF	A5A3E0	1075 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	VPS37C	A5D8V6	355 aa	Predicted RBP	11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	SPATA31C2	B4DYI2	1134 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	CCL5	P13501	91 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	PTGS1	P23219	599 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	TOB1	P50616	345 aa	Predicted RBP	11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	SP2	Q02086	613 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	REST	Q13127	1097 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	LHX8	Q68G74	356 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	MOXD1	Q6UVY6	613 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	SEPT14	Q6ZU15	432 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	NIPA1	Q7RTP0	329 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	NEK8	Q86SG6	692 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	GPRASP2	Q96D09	838 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	HMX1	Q9NP08	348 aa	Predicted RBP	11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	PCDHB8	Q9UN66	801 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	GNE	Q9Y223	722 aa	Known RBP	11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658		A0A0U1RQG5	324 aa	Predicted RBP	11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	TDP2	O95551	362 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	AR	P10275	920 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	SMPD1	P17405	629 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658		Q4G0T1	1027 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	DUSP28	Q4G0W2	176 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	GJC2	Q5T442	439 aa	Predicted RBP	11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	MCTP1	Q6DN14	999 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	IQSEC1	Q6DN90	963 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	PPP4R3A	Q6IN85	833 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	FERMT3	Q86UX7	667 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	SCFD2	Q8WU76	684 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	LENG1	Q96BZ8	264 aa	Predicted RBP	11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	MS4A3	Q96HJ5	214 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	11.69	□□□□□ -0.54	6e-9	■□□□□ 11
ZNF3-205	ENST00000413658	BCAS3	Q9H6U6	928 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	KCNH7	Q9NS40	1196 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	DDX41	Q9UJV9	622 aa	Known RBP	11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	FAM184B	Q9ULE4	1060 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	ZDHHC9	Q9Y397	364 aa		11.69	□□□□□ -0.54
ZNF3-205	ENST00000413658	FIBP	O43427	364 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	SLC37A4	O43826	429 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	ATP9A	O75110	1047 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	TGFB3	P10600	412 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	AKR1A1	P14550	325 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	KCNA2	P16389	499 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	TNFAIP2	Q03169	654 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	PDAP1	Q13442	181 aa	Known RBP	11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	MTMR1	Q13613	665 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	LY6K	Q17RY6	165 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	LETM2	Q2VYF4	491 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	GNPTAB	Q3T906	1256 aa		11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	DDX20	Q9UHI6	824 aa	Known RBP	11.68	□□□□□ -0.54
ZNF3-205	ENST00000413658	CTAGE5	O15320	804 aa		11.67	□□□□□ -0.54
ZNF3-205	ENST00000413658	MAFG	O15525	162 aa		11.67	□□□□□ -0.54
ZNF3-205	ENST00000413658	CCNT1	O60563	726 aa	Known RBP	11.67	□□□□□ -0.54
ZNF3-205	ENST00000413658	DUSP11	O75319	330 aa	Known RBP	11.67	□□□□□ -0.54
ZNF3-205	ENST00000413658	BRD1	O95696	1058 aa		11.67	□□□□□ -0.54
ZNF3-205	ENST00000413658	MYC	P01106	439 aa	Predicted RBP	11.67	□□□□□ -0.54
ZNF3-205	ENST00000413658	ZSCAN22	P10073	491 aa	Predicted RBP	11.67	□□□□□ -0.54
ZNF3-205	ENST00000413658	TXN	P10599	105 aa	Known RBP	11.67	□□□□□ -0.54
ZNF3-205	ENST00000413658	GCFC2	P16383	781 aa	Known RBP	11.67	□□□□□ -0.54
ZNF3-205	ENST00000413658	UBA1	P22314	1058 aa	Known RBP	11.67	□□□□□ -0.54
ZNF3-205	ENST00000413658	CNGA1	P29973	690 aa		11.67	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms