RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 SYT1P21579 422 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 U2AF2P26368 475 aaKnown RBP eCLIP13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 MTMR1Q13613 665 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 NEDD9Q14511 834 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 LETM2Q2VYF4 491 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 BRDTQ58F21 947 aaPredicted RBP13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 ANO1Q5XXA6 986 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 LHX8Q68G74 356 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 PLA2G4DQ86XP0 818 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 NOSTRINQ8IVI9 506 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 DHX37Q8IY37 1157 aaKnown RBP13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 U2AF1L4Q8WU68 220 aaKnown RBP13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 TNFRSF25Q93038 417 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 SENP7Q9BQF6 1050 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 XPNPEP3Q9NQH7 507 aa13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 NOL7Q9UMY1 257 aaKnown RBP13.54□□□□□ -0.24
SPTLC1-202ENST00000337841 CYP3A7-CYP3A51PA0A087WV96 503 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 VPS37CA5D8V6 355 aaPredicted RBP13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 GH1P01241 217 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 GCFC2P16383 781 aaKnown RBP13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 CYP3A7P24462 503 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 GJA8P48165 433 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 LAMC2Q13753 1193 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 LY6KQ17RY6 165 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 PRR16Q569H4 304 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 MOXD1Q6UVY6 613 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 RNF180Q86T96 592 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 CYP2W1Q8TAV3 490 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 CRISPLD2Q9H0B8 497 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 MLXIPQ9HAP2 919 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 KCNH7Q9NS40 1196 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 OGDHLQ9ULD0 1010 aa13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 GNEQ9Y223 722 aaKnown RBP13.53□□□□□ -0.24
SPTLC1-202ENST00000337841 FAM86B1E9PN63 330 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 STX6O43752 255 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 ZEB2O60315 1214 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 MARCH6O60337 910 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 CCNT1O60563 726 aaKnown RBP13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 FAM86B2P0C5J1 330 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 ARP10275 920 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 ATP2B1P20020 1258 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 TRAPPC10P48553 1259 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 GJA9P57773 515 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 SETQ01105 290 aaPredicted RBP13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 Q4G0T1 1027 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 EARS2Q5JPH6 523 aaKnown RBP13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 PPP4R3AQ6IN85 833 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 OR6J1Q8NGC5 347 aa13.52□□□□□ -0.25
SPTLC1-202ENST00000337841 ARIH2O95376 493 aa13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 BAG4O95429 457 aaKnown RBP13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 GGPS1O95749 300 aa13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 PGK1P00558 417 aa13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 C6orf222P0C671 652 aaPredicted RBP13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 GNASQ5JWF2 1037 aa13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 CELF3Q5SZQ8 465 aaKnown RBP13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 TLK2Q86UE8 772 aa13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 ANKLE1Q8NAG6 615 aa13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 PCSK9Q8NBP7 692 aaKnown RBP13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 SDF4Q9BRK5 362 aa13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 ZNF577Q9BSK1 485 aa13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 UPF3AQ9H1J1 476 aaKnown RBP13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 AGO4Q9HCK5 861 aaKnown RBP13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 TBC1D22BQ9NU19 505 aa13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 DDX25Q9UHL0 483 aaKnown RBP13.51□□□□□ -0.25
SPTLC1-202ENST00000337841 IGLV3-22A0A075B6J6 115 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 FAM205CA6NFA0 338 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 KIF28PB7ZC32 967 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 KBTBD13C9JR72 458 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 EDIL3O43854 480 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 KPNA6O60684 536 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 ATP9AO75110 1047 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 TDP2O95551 362 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 CPT1AP50416 773 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 NKX3-2P78367 333 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 SP2Q02086 613 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 SEMA3FQ13275 785 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 LRRC41Q15345 812 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 FSCN1Q16658 493 aaKnown RBP13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 RILPL1Q5EBL4 403 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 TMEM63BQ5T3F8 832 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 GJC2Q5T442 439 aaPredicted RBP13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 MYSM1Q5VVJ2 828 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 CYFIP1Q7L576 1253 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 BRAPQ7Z569 592 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 COPS5Q92905 334 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 EMID1Q96A84 441 aaPredicted RBP13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 SPATA33Q96N06 139 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 MBOAT7Q96N66 472 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 TSEN34Q9BSV6 310 aaKnown RBP13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 ZSCAN16Q9H4T2 348 aaPredicted RBP13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 PKD2L1Q9P0L9 805 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 TCEAL9Q9UHQ7 104 aa13.5□□□□□ -0.25
SPTLC1-202ENST00000337841 NFASCO94856 1347 aa13.49□□□□□ -0.25
SPTLC1-202ENST00000337841 SYNRGQ9UMZ2 1314 aa13.49□□□□□ -0.25
SPTLC1-202ENST00000337841 A6NJR5 290 aa13.49□□□□□ -0.25
SPTLC1-202ENST00000337841 IPO5O00410 1097 aaKnown RBP13.49□□□□□ -0.25
SPTLC1-202ENST00000337841 NOP56O00567 594 aaKnown RBP13.49□□□□□ -0.25
SPTLC1-202ENST00000337841 ADCY6O43306 1168 aa13.49□□□□□ -0.25
SPTLC1-202ENST00000337841 PPFIA4O75335 1185 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms