RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	COB	P00163	385 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	COX4	P04037	155 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	FUM1	P08417	488 aa	Known RBP	4.37	□□□□□ -1.71
PRP28	YDR243C	SPS4	P09937	338 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	MRP1	P10662	321 aa	Known RBP	4.37	□□□□□ -1.71
PRP28	YDR243C	ZWF1	P11412	505 aa	Known RBP	4.37	□□□□□ -1.71
PRP28	YDR243C	PEP5	P12868	1029 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	FUR1	P18562	216 aa	Known RBP	4.37	□□□□□ -1.71
PRP28	YDR243C	CBP3	P21560	335 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	PTP2	P29461	750 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	ECM25	P32525	599 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	SIP2	P34164	415 aa	Known RBP	4.37	□□□□□ -1.71
PRP28	YDR243C	OAR1	P35731	278 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	HMT1	P38074	348 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.37	□□□□□ -1.71	not detected
PRP28	YDR243C	ERV15	P38312	142 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	UBA4	P38820	440 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	RGI2	P40188	164 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	MND2	P40577	368 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	YIR035C	P40579	254 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	SPT20	P50875	604 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	UBC12	P52491	188 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	PPT1	P53043	513 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	UFD1	P53044	361 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	YBP2	P53169	641 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	SWC4	P53201	476 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	YGR042W	P53227	271 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	VOA1	P53262	265 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	OCA2	P53949	197 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	UBX4	P54730	416 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	YMR226C	Q05016	267 aa	Known RBP	4.37	□□□□□ -1.71
PRP28	YDR243C	VPS74	Q06385	345 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	HIM1	Q06674	414 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	ASA1	Q06822	443 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	RFU1	Q08003	200 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	THI21	Q08975	551 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	YPL272C	Q08984	517 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	SVS1	Q12254	260 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	RPN6	Q12377	434 aa		4.37	□□□□□ -1.71
PRP28	YDR243C	DCP1	Q12517	231 aa	Predicted RBP	4.37	□□□□□ -1.71
PRP28	YDR243C	ATP2	P00830	511 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	ARG80	P07249	177 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	IMA3	P0CW40	589 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	IMA4	P0CW41	589 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	RPS24A	P0CX31	135 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	RPS24B	P0CX32	135 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	RPL4A	P10664	362 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	RPL3	P14126	387 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	IDI1	P15496	288 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	SIR1	P21691	654 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	RPB10	P22139	70 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	YCK1	P23291	538 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	IFM1	P25038	676 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	VMA5	P31412	392 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	HMX1	P32339	317 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	HYM1	P32464	399 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	PTM1	P32857	523 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	PDR3	P33200	976 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	SER1	P33330	395 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	MCD4	P36051	919 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	SRP102	P36057	244 aa	Predicted RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	COS8	P38723	381 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	SUR2	P38992	349 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	ECM10	P39987	644 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	SCC4	P40090	624 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	TIR3	P40552	269 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	IDP2	P41939	412 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	IRC18	P47056	224 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	YJR030C	P47101	745 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	RPL4B	P49626	362 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	SUT1	P53032	299 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	SLX9	P53251	210 aa	Predicted RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	HHO1	P53551	258 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	ALG12	P53730	551 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	MTQ1	P53944	314 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	HDA1	P53973	706 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	ALO1	P54783	526 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	SHR3	Q02774	210 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	NGL2	Q03264	515 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	TRS130	Q03660	1102 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	YML037C	Q03703	340 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	MYO5	Q04439	1219 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	RCO1	Q04779	684 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	IMA2	Q08295	589 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	UAF30	Q08747	228 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	CWC2	Q12046	339 aa	Predicted RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	HFI1	Q12060	488 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	GET3	Q12154	354 aa	Known RBP	4.36	□□□□□ -1.71
PRP28	YDR243C	TY3A-G	Q12173	290 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	HOS1	Q12214	470 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	YPR1	Q12458	312 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	TY3A-I	Q99219	290 aa		4.36	□□□□□ -1.71
PRP28	YDR243C	ERG11	P10614	530 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	SNF4	P12904	322 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	PRP2	P20095	876 aa	Predicted RBP	4.35	□□□□□ -1.71
PRP28	YDR243C	CCA1	P21269	546 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	RAD14	P28519	371 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	COQ2	P32378	372 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	HIR1	P32479	840 aa		4.35	□□□□□ -1.71
PRP28	YDR243C	TCA17	P32613	152 aa		4.35	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 51.3 ms