RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C VTC2P43585 828 aa3.4□□□□□ -1.87
RUB1YDR139C MSO1P53604 210 aaKnown RBP3.4□□□□□ -1.87
RUB1YDR139C WSC2P53832 503 aa3.4□□□□□ -1.87
RUB1YDR139C NCS2P53923 493 aaPredicted RBP3.4□□□□□ -1.87
RUB1YDR139C YLR287CQ05881 355 aa3.4□□□□□ -1.87
RUB1YDR139C VTA1Q06263 330 aa3.4□□□□□ -1.87
RUB1YDR139C CBS2P14905 389 aa3.39□□□□□ -1.87
RUB1YDR139C ATP10P18496 279 aa3.39□□□□□ -1.87
RUB1YDR139C RNA14P25298 677 aaKnown RBP3.39□□□□□ -1.87
RUB1YDR139C IDH2P28241 369 aaKnown RBP3.39□□□□□ -1.87
RUB1YDR139C NDI1P32340 513 aa3.39□□□□□ -1.87
RUB1YDR139C ERG3P32353 365 aa3.39□□□□□ -1.87
RUB1YDR139C THI2P38141 450 aa3.39□□□□□ -1.87
RUB1YDR139C ISC1P40015 477 aaKnown RBP3.39□□□□□ -1.87
RUB1YDR139C VMA13P41807 478 aaKnown RBP3.39□□□□□ -1.87
RUB1YDR139C MNP1P53163 194 aaPredicted RBP3.39□□□□□ -1.87
RUB1YDR139C CAF40P53829 373 aa3.39□□□□□ -1.87
RUB1YDR139C BOR1P53838 576 aa3.39□□□□□ -1.87
RUB1YDR139C PIR3Q03180 325 aa3.39□□□□□ -1.87
RUB1YDR139C SFI1Q12369 946 aa3.39□□□□□ -1.87
RUB1YDR139C RRD2Q12461 358 aa3.39□□□□□ -1.87
RUB1YDR139C YAR066WP0CX18 203 aa3.38□□□□□ -1.87
RUB1YDR139C YHR214WP0CX19 203 aa3.38□□□□□ -1.87
RUB1YDR139C PMR1P13586 950 aa3.38□□□□□ -1.87
RUB1YDR139C RPL3P14126 387 aaKnown RBP3.38□□□□□ -1.87
RUB1YDR139C CPR1P14832 162 aaKnown RBP3.38□□□□□ -1.87
RUB1YDR139C PPH22P23595 377 aa3.38□□□□□ -1.87
RUB1YDR139C CLB3P24870 427 aa3.38□□□□□ -1.87
RUB1YDR139C NPL6P32832 435 aa3.38□□□□□ -1.87
RUB1YDR139C PCA1P38360 1216 aa3.38□□□□□ -1.87
RUB1YDR139C GCD10P41814 478 aa3.38□□□□□ -1.87
RUB1YDR139C TFG2P41896 400 aaPredicted RBP3.38□□□□□ -1.87
RUB1YDR139C ARK1P53974 638 aa3.38□□□□□ -1.87
RUB1YDR139C SYF1Q04048 859 aaPredicted RBP3.38□□□□□ -1.87
RUB1YDR139C HNT3Q08702 217 aa3.38□□□□□ -1.87
RUB1YDR139C YLL056CQ12177 298 aa3.38□□□□□ -1.87
RUB1YDR139C SCM3Q12334 223 aa3.38□□□□□ -1.87
RUB1YDR139C YCL021W-AQ96VH3 125 aa3.38□□□□□ -1.87
RUB1YDR139C GPH1P06738 902 aaKnown RBP3.37□□□□□ -1.87
RUB1YDR139C CLC1P17891 233 aa3.37□□□□□ -1.87
RUB1YDR139C YCR100CP25606 316 aa3.37□□□□□ -1.87
RUB1YDR139C HXT3P32466 567 aaKnown RBP3.37□□□□□ -1.87
RUB1YDR139C GLC7P32598 312 aaKnown RBP3.37□□□□□ -1.87
RUB1YDR139C MRP4P32902 394 aa3.37□□□□□ -1.87
RUB1YDR139C HCS1P34243 683 aa3.37□□□□□ -1.87
RUB1YDR139C AVT5P38176 459 aa3.37□□□□□ -1.87
RUB1YDR139C MKT1P40850 830 aaKnown RBP3.37□□□□□ -1.87
RUB1YDR139C DLD2P46681 530 aaKnown RBP3.37□□□□□ -1.87
RUB1YDR139C AVT4P50944 713 aa3.37□□□□□ -1.87
RUB1YDR139C POP6P53218 158 aa3.37□□□□□ -1.87
RUB1YDR139C DSL1P53847 754 aa3.37□□□□□ -1.87
RUB1YDR139C PNG1Q02890 363 aa3.37□□□□□ -1.87
RUB1YDR139C TLG2Q08144 397 aa3.37□□□□□ -1.87
RUB1YDR139C PGA3Q12746 312 aaKnown RBP3.37□□□□□ -1.87
RUB1YDR139C HIP1P06775 603 aa3.36□□□□□ -1.87
RUB1YDR139C YIM1P28625 365 aa3.36□□□□□ -1.87
RUB1YDR139C NIP100P33420 868 aa3.36□□□□□ -1.87
RUB1YDR139C SAS3P34218 831 aa3.36□□□□□ -1.87
RUB1YDR139C RRT5P43607 289 aa3.36□□□□□ -1.87
RUB1YDR139C RPA49Q01080 415 aaPredicted RBP3.36□□□□□ -1.87
RUB1YDR139C ODC1Q03028 310 aa3.36□□□□□ -1.87
RUB1YDR139C YOL159C-AQ3E769 90 aa3.36□□□□□ -1.87
RUB1YDR139C YLR278CQ05854 1341 aa3.36□□□□□ -1.87
RUB1YDR139C PRP21P32524 280 aaPredicted RBP3.35□□□□□ -1.87
RUB1YDR139C NFU1P32860 256 aa3.35□□□□□ -1.87
RUB1YDR139C VHC1P38329 1120 aa3.35□□□□□ -1.87
RUB1YDR139C TRS85P46944 698 aa3.35□□□□□ -1.87
RUB1YDR139C FMS1P50264 508 aa3.35□□□□□ -1.87
RUB1YDR139C ART5P53244 586 aaKnown RBP3.35□□□□□ -1.87
RUB1YDR139C GIS2P53849 153 aaKnown RBP RIP-Chip data3.35□□□□□ -1.87 RIP-Chip
RUB1YDR139C KTR5P53966 522 aaPredicted RBP3.35□□□□□ -1.87
RUB1YDR139C HSP31Q04432 237 aa3.35□□□□□ -1.87
RUB1YDR139C YPL199CQ08954 240 aa3.35□□□□□ -1.87
RUB1YDR139C HEM15P16622 393 aa3.34□□□□□ -1.87
RUB1YDR139C FUR1P18562 216 aaKnown RBP3.34□□□□□ -1.87
RUB1YDR139C APE2P32454 952 aaKnown RBP3.34□□□□□ -1.87
RUB1YDR139C YCR041WP37265 110 aa3.34□□□□□ -1.87
RUB1YDR139C NAT2P37293 288 aa3.34□□□□□ -1.87
RUB1YDR139C ARA1P38115 344 aa3.34□□□□□ -1.87
RUB1YDR139C CCT2P39076 527 aaKnown RBP3.34□□□□□ -1.87
RUB1YDR139C GPD2P41911 440 aaKnown RBP3.34□□□□□ -1.87
RUB1YDR139C YFL067WP43537 175 aa3.34□□□□□ -1.87
RUB1YDR139C YPI1P43587 155 aa3.34□□□□□ -1.87
RUB1YDR139C ECM27P47144 725 aa3.34□□□□□ -1.87
RUB1YDR139C YIP1P53039 248 aa3.34□□□□□ -1.87
RUB1YDR139C PCP1P53259 346 aa3.34□□□□□ -1.87
RUB1YDR139C MRP51Q02950 344 aa3.34□□□□□ -1.87
RUB1YDR139C SIL1Q08199 421 aa3.34□□□□□ -1.87
RUB1YDR139C MUM3Q08750 479 aa3.34□□□□□ -1.87
RUB1YDR139C RSA1Q08932 381 aa3.34□□□□□ -1.87
RUB1YDR139C YER078W-AQ3E7A2 54 aa3.34□□□□□ -1.87
RUB1YDR139C RIP1P08067 215 aa3.33□□□□□ -1.88
RUB1YDR139C REC107P21651 314 aa3.33□□□□□ -1.88
RUB1YDR139C ECM25P32525 599 aa3.33□□□□□ -1.88
RUB1YDR139C RML2P32611 393 aa3.33□□□□□ -1.88
RUB1YDR139C YBR139WP38109 508 aa3.33□□□□□ -1.88
RUB1YDR139C SSN8P47821 323 aa3.33□□□□□ -1.88
RUB1YDR139C IBD2P53892 351 aa3.33□□□□□ -1.88
RUB1YDR139C SPC19Q03954 165 aa3.33□□□□□ -1.88
RUB1YDR139C YDR387CQ04162 555 aa3.33□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms