RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	RRG8	Q06109	277 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	MRH1	Q12117	320 aa	Predicted RBP	4.2	□□□□□ -1.74
CDC9	YDL164C	AI1	P03875	834 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	AI3	P03877	415 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	SIN4	P32259	974 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	APT2	P36973	181 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	DUG2	P38149	878 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	MBB1	P39534	108 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	ATG27	P46989	271 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	BUL1	P48524	976 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	MFM1	Q02783	413 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	NRG1	Q03125	231 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	RRB1	Q04225	511 aa	Known RBP	4.2	□□□□□ -1.74
CDC9	YDL164C	SSQ1	Q05931	657 aa	Predicted RBP	4.2	□□□□□ -1.74
CDC9	YDL164C	DUS4	Q06063	367 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	YLR455W	Q06188	304 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	IPK1	Q06667	281 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	YPL216W	Q08964	1102 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	BAG7	Q12128	409 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	TRM11	Q12463	433 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	FMP16	Q12497	93 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	YIL002W-A	Q3E7Z5	69 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	TCB3	Q03640	1545 aa	Known RBP	4.19	□□□□□ -1.74
CDC9	YDL164C	ADE4	P04046	510 aa	Known RBP	4.19	□□□□□ -1.74
CDC9	YDL164C	NFT1	P0CE68	1218 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	PDE1	P22434	369 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	HXT2	P23585	541 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	MCM4	P30665	933 aa	Known RBP	4.19	□□□□□ -1.74
CDC9	YDL164C	HXT1	P32465	570 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	UIP3	P39547	235 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	RPN11	P43588	306 aa	Known RBP	4.19	□□□□□ -1.74
CDC9	YDL164C	BRO1	P48582	844 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	GIM3	P53900	129 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	HEF3	P53978	1044 aa	Known RBP	4.19	□□□□□ -1.74
CDC9	YDL164C	DIA2	Q08496	732 aa	Predicted RBP	4.19	□□□□□ -1.74
CDC9	YDL164C	RDR1	Q08904	546 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	PUS9	Q12069	462 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	LCB4	Q12246	624 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	MSS116	P15424	664 aa	Known RBP	4.19	□□□□□ -1.74
CDC9	YDL164C	RVS161	P25343	265 aa	Known RBP	4.19	□□□□□ -1.74
CDC9	YDL164C	KAR4	P25583	335 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	ADY2	P25613	283 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	MVD1	P32377	396 aa	Known RBP	4.19	□□□□□ -1.74
CDC9	YDL164C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
CDC9	YDL164C	RPC37	P36121	282 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	ADE17	P38009	592 aa	Known RBP	4.19	□□□□□ -1.74
CDC9	YDL164C	PPS1	P38148	807 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	TSC10	P38342	320 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	YHR122W	P38829	231 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	URB2	P47108	1174 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	PGA2	P53903	129 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	YPL062W	Q02781	134 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	YPR022C	Q12139	1133 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	YDL177C	Q12257	170 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	YBL111C	Q3E7Y5	667 aa		4.19	□□□□□ -1.74
CDC9	YDL164C	PEP4	P07267	405 aa	Known RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	STE4	P18851	423 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	BOS1	P25385	244 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	CWP1	P28319	239 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	PIH1	P38768	344 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	CCT2	P39076	527 aa	Known RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	TOS3	P43637	560 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	YAR1	P46683	200 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	TRF5	P48561	642 aa	Known RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	BUD17	P53727	317 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	URH1	Q04179	340 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	YDR109C	Q04585	715 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	TEN1	Q07921	160 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	FUS3	P16892	353 aa	Known RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	SEC15	P22224	910 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	RPS5	P26783	225 aa	Known RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	BEM1	P29366	551 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	PMI40	P29952	429 aa	Known RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	YPS1	P32329	569 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	CUE2	P36075	443 aa	Known RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	CTP1	P38152	299 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	GDT1	P38301	280 aa	Predicted RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	RRP4	P38792	359 aa	Known RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	ANS1	P38832	159 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	HAM1	P47119	197 aa	Known RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	PMT5	P52867	743 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	VPS62	P53285	467 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	SHR3	Q02774	210 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	ROT1	Q03691	256 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	ENT5	Q03769	411 aa	Known RBP	4.18	□□□□□ -1.74
CDC9	YDL164C	BSC6	Q08280	497 aa		4.18	□□□□□ -1.74
CDC9	YDL164C	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
CDC9	YDL164C	PMA1	P05030	918 aa	Known RBP	4.17	□□□□□ -1.74
CDC9	YDL164C	YPK1	P12688	680 aa	Known RBP	4.17	□□□□□ -1.74
CDC9	YDL164C	GSH1	P32477	678 aa		4.17	□□□□□ -1.74
CDC9	YDL164C	GDA1	P32621	518 aa		4.17	□□□□□ -1.74
CDC9	YDL164C	QDR3	P38227	689 aa		4.17	□□□□□ -1.74
CDC9	YDL164C	YJL118W	P47022	219 aa		4.17	□□□□□ -1.74
CDC9	YDL164C	TOS2	P50078	622 aa		4.17	□□□□□ -1.74
CDC9	YDL164C	DSL1	P53847	754 aa		4.17	□□□□□ -1.74
CDC9	YDL164C	RIM13	Q03792	727 aa		4.17	□□□□□ -1.74
CDC9	YDL164C	ATC1	Q04005	294 aa		4.17	□□□□□ -1.74
CDC9	YDL164C	TIP41	Q12199	356 aa		4.17	□□□□□ -1.74
CDC9	YDL164C	RMD5	Q12508	421 aa		4.17	□□□□□ -1.74
CDC9	YDL164C	COX2	P00410	251 aa		4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 38.7 ms