RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 PSMC6P62333 389 aa16.82■□□□□ 0.28
SMARCE1-216ENST00000580419 NBPF20Q3BBV1 942 aa16.82■□□□□ 0.28
SMARCE1-216ENST00000580419 PPTC7Q8NI37 304 aa16.82■□□□□ 0.28
SMARCE1-216ENST00000580419 CAGE1Q8TC20 777 aa16.82■□□□□ 0.28
SMARCE1-216ENST00000580419 TIFAQ96CG3 184 aa16.82■□□□□ 0.28
SMARCE1-216ENST00000580419 TMEM87BQ96K49 555 aa16.82■□□□□ 0.28
SMARCE1-216ENST00000580419 PDCD2LQ9BRP1 358 aa16.82■□□□□ 0.28
SMARCE1-216ENST00000580419 WNT8AQ9H1J5 351 aa16.82■□□□□ 0.28
SMARCE1-216ENST00000580419 CYTH3O43739 400 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 PPP1R11O60927 126 aaPredicted RBP16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 PPFIA4O75335 1185 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 CFBP00751 764 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 MMP3P08254 477 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 MYL3P08590 195 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 PTGS1P23219 599 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 KIF5BP33176 963 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 LIFRP42702 1097 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 GNAQP50148 359 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 BFSP2Q13515 415 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 DGKDQ16760 1214 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 BMP2KLQ5H9B9 411 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 XRRA1Q6P2D8 792 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 KATNAL1Q9BW62 490 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 VAT1LQ9HCJ6 419 aa16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 RBM8AQ9Y5S9 174 aaKnown RBP16.81■□□□□ 0.28
SMARCE1-216ENST00000580419 GCOM1H8Y6P7 765 aaPredicted RBP16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 POLR2MP0CAP2 368 aa16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 MCM5P33992 734 aa16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 ANTXR2P58335 489 aa16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 SLC35G1Q2M3R5 365 aa16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 TMEM67Q5HYA8 995 aa16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 CCDC155Q8N6L0 562 aa16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 TET1Q8NFU7 2136 aa16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 VWCEQ96DN2 955 aa16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 ZNF576Q9H609 170 aa16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 TRMT13Q9NUP7 481 aaKnown RBP16.8■□□□□ 0.28
SMARCE1-216ENST00000580419 HAS3O00219 553 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 PIK3CDO00329 1044 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 RGS20O76081 388 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 F2P00734 622 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 CALM1P0DP23 149 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 CALM2P0DP24 149 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 CALM3P0DP25 149 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 SEPT14Q6ZU15 432 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 PHOSPHO2Q8TCD6 241 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 AFAP1L1Q8TED9 768 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 AFG1LQ8WV93 481 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 COPS5Q92905 334 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 PBX4Q9BYU1 374 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 LSG1Q9H089 658 aaKnown RBP16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 LY9Q9HBG7 655 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 MSRAQ9UJ68 235 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 GBF1Q92538 1859 aa16.79■□□□□ 0.28
SMARCE1-216ENST00000580419 UMODL1Q5DID0 1318 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 ACTN1P12814 892 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 EIF2AK2P19525 551 aaKnown RBP16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 CCND2P30279 289 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 ICAM3P32942 547 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 PGM5Q15124 567 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 NECTIN1Q15223 517 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 LY6KQ17RY6 165 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 MYSM1Q5VVJ2 828 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 CASC1Q6TDU7 716 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 CENPQQ7L2Z9 268 aaPredicted RBP16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 RETREG2Q8NC44 543 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 MAFAQ8NHW3 353 aaPredicted RBP16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 CTCFLQ8NI51 663 aaPredicted RBP16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 KAT2BQ92831 832 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 FAM161BQ96MY7 647 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 PIGSQ96S52 555 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 ESYT1Q9BSJ8 1104 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 PCDHA11Q9Y5I1 949 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 MRVI1Q9Y6F6 885 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 SLC4A7Q9Y6M7 1214 aa16.78■□□□□ 0.28
SMARCE1-216ENST00000580419 SCN5AQ14524 2016 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 DLL1O00548 723 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 BAIAP3O94812 1187 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 IQCF3P0C7M6 154 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 ACRP10323 421 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 FOSL2P15408 326 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 CCL23P55773 120 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 TSGA10IPQ3SY00 556 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 GNPTABQ3T906 1256 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 CELF3Q5SZQ8 465 aaKnown RBP16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 SGMS1Q86VZ5 419 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 DHX37Q8IY37 1157 aaKnown RBP16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 ZNF654Q8IZM8 581 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 INPP4AQ96PE3 977 aaPredicted RBP16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 GTF2IRD1Q9UHL9 959 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 TAF6LQ9Y6J9 622 aa16.77■□□□□ 0.28
SMARCE1-216ENST00000580419 CYP2C9P11712 490 aa16.76■□□□□ 0.27
SMARCE1-216ENST00000580419 GRIN2CQ14957 1233 aa16.76■□□□□ 0.27
SMARCE1-216ENST00000580419 PTGISQ16647 500 aa16.76■□□□□ 0.27
SMARCE1-216ENST00000580419 MYLIPQ8WY64 445 aa16.76■□□□□ 0.27
SMARCE1-216ENST00000580419 RRP36Q96EU6 259 aaKnown RBP16.76■□□□□ 0.27
SMARCE1-216ENST00000580419 CTAGE1Q96RT6 745 aa16.76■□□□□ 0.27
SMARCE1-216ENST00000580419 SLC9A7Q96T83 725 aa16.76■□□□□ 0.27
SMARCE1-216ENST00000580419 SENP7Q9BQF6 1050 aa16.76■□□□□ 0.27
SMARCE1-216ENST00000580419 SENP2Q9HC62 589 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms