RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 EIF2AK2P19525 551 aaKnown RBP12.65□□□□□ -0.38
CHD3-216ENST00000573936 CCDC144BQ3MJ40 725 aa12.65□□□□□ -0.38
CHD3-216ENST00000573936 XRRA1Q6P2D8 792 aa12.65□□□□□ -0.38
CHD3-216ENST00000573936 USP17L6PQ6QN14 398 aa12.65□□□□□ -0.38
CHD3-216ENST00000573936 ARRDC4Q8NCT1 418 aa12.65□□□□□ -0.38
CHD3-216ENST00000573936 PDCD2LQ9BRP1 358 aa12.65□□□□□ -0.38
CHD3-216ENST00000573936 KATNBL1Q9H079 304 aa12.65□□□□□ -0.38
CHD3-216ENST00000573936 ZMYND12Q9H0C1 365 aa12.65□□□□□ -0.38
CHD3-216ENST00000573936 SPC25Q9HBM1 224 aa12.65□□□□□ -0.38
CHD3-216ENST00000573936 SMCHD1A6NHR9 2005 aa12.65□□□□□ -0.38
CHD3-216ENST00000573936 RBM47A0AV96 593 aaKnown RBP12.64□□□□□ -0.39
CHD3-216ENST00000573936 NKRFO15226 690 aaKnown RBP eCLIP12.64□□□□□ -0.39
CHD3-216ENST00000573936 DUSP11O75319 330 aaKnown RBP12.64□□□□□ -0.39
CHD3-216ENST00000573936 STAM2O75886 525 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 CCND2P30279 289 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 TNFAIP2Q03169 654 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 AP3B2Q13367 1082 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 PGM5Q15124 567 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 TAPT1Q6NXT6 567 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 EEPD1Q7L9B9 569 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 VSIG10LQ86VR7 867 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 FBXO16Q8IX29 292 aaPredicted RBP12.64□□□□□ -0.39
CHD3-216ENST00000573936 NECAB1Q8N987 351 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 LLPHQ9BRT6 129 aaKnown RBP12.64□□□□□ -0.39
CHD3-216ENST00000573936 MTMR10Q9NXD2 777 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 Q9Y3F1 56 aa12.64□□□□□ -0.39
CHD3-216ENST00000573936 BAZ2BQ9UIF8 2168 aaKnown RBP12.64□□□□□ -0.39
CHD3-216ENST00000573936 FRMPD4Q14CM0 1322 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 LARGE1O95461 756 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 MYCLP12524 364 aaPredicted RBP12.63□□□□□ -0.39
CHD3-216ENST00000573936 NLRP5P59047 1200 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 TTLL4Q14679 1199 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 UBE2SQ16763 222 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 GALNT17Q6IS24 598 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 TYW1BQ6NUM6 668 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 KCNV1Q6PIU1 500 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 RNF180Q86T96 592 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 SCFD2Q8WU76 684 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 LBHD1Q9BQE6 289 aaPredicted RBP12.63□□□□□ -0.39
CHD3-216ENST00000573936 WDR11Q9BZH6 1224 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 XPNPEP3Q9NQH7 507 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 ORC3Q9UBD5 711 aaPredicted RBP12.63□□□□□ -0.39
CHD3-216ENST00000573936 PCDHA6Q9UN73 950 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 PCDHA8Q9Y5H6 950 aa12.63□□□□□ -0.39
CHD3-216ENST00000573936 EYSQ5T1H1 3165 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 PPFIA3O75145 1194 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 CTDNEP1O95476 244 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 ADCYAP1R1P41586 468 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 CLK2P49760 499 aaKnown RBP12.62□□□□□ -0.39
CHD3-216ENST00000573936 GNPTABQ3T906 1256 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 DUSP28Q4G0W2 176 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 ANO1Q5XXA6 986 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 PCNX4Q63HM2 1172 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 CCDC83Q8IWF9 413 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 NSUN7Q8NE18 718 aaKnown RBP12.62□□□□□ -0.39
CHD3-216ENST00000573936 AP5M1Q9H0R1 490 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 PDGFCQ9NRA1 345 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 VPS54Q9P1Q0 977 aa12.62□□□□□ -0.39
CHD3-216ENST00000573936 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.61□□□□□ -0.39
CHD3-216ENST00000573936 KBTBD13C9JR72 458 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 DNM1LO00429 736 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 ZEB2O60315 1214 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 TGFB3P10600 412 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 COL6A1P12109 1028 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 SMPD1P17405 629 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 GJA9P57773 515 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 NKX3-2P78367 333 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 HMGN5P82970 282 aaKnown RBP12.61□□□□□ -0.39
CHD3-216ENST00000573936 MDM2Q00987 491 aaPredicted RBP12.61□□□□□ -0.39
CHD3-216ENST00000573936 LRRC26Q2I0M4 334 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 SEPT14Q6ZU15 432 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 NLRX1Q86UT6 975 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 REXO1Q8N1G1 1221 aaKnown RBP12.61□□□□□ -0.39
CHD3-216ENST00000573936 TSEN34Q9BSV6 310 aaKnown RBP12.61□□□□□ -0.39
CHD3-216ENST00000573936 ALG1Q9BT22 464 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 ANO3Q9BYT9 981 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 UPF3AQ9H1J1 476 aaKnown RBP12.61□□□□□ -0.39
CHD3-216ENST00000573936 PRKAG2Q9UGJ0 569 aa12.61□□□□□ -0.39
CHD3-216ENST00000573936 GNEQ9Y223 722 aaKnown RBP12.61□□□□□ -0.39
CHD3-216ENST00000573936 DDX49Q9Y6V7 483 aaKnown RBP12.61□□□□□ -0.39
CHD3-216ENST00000573936 LCTP09848 1927 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 DYNC1LI2O43237 492 aaPredicted RBP12.6□□□□□ -0.39
CHD3-216ENST00000573936 PGK1P00558 417 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 TXNP10599 105 aaKnown RBP12.6□□□□□ -0.39
CHD3-216ENST00000573936 TRIM29Q14134 588 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 LRRC41Q15345 812 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 BRDTQ58F21 947 aaPredicted RBP12.6□□□□□ -0.39
CHD3-216ENST00000573936 JAKMIP3Q5VZ66 844 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 TLK2Q86UE8 772 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.6□□□□□ -0.39
CHD3-216ENST00000573936 BLIDQ8IZY5 108 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 PCSK9Q8NBP7 692 aaKnown RBP12.6□□□□□ -0.39
CHD3-216ENST00000573936 DAGLBQ8NCG7 672 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 PCDHA4Q9UN74 947 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 MRVI1Q9Y6F6 885 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 SYNRGQ9UMZ2 1314 aa12.6□□□□□ -0.39
CHD3-216ENST00000573936 MOXD2PA6NHM9 499 aa12.59□□□□□ -0.39
CHD3-216ENST00000573936 MAFGO15525 162 aa12.59□□□□□ -0.39
CHD3-216ENST00000573936 ADAMTS4O75173 837 aa12.59□□□□□ -0.39
CHD3-216ENST00000573936 MYCNP04198 464 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms