RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 AMNQ9BXJ7 453 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MTIF3Q9H2K0 278 aaKnown RBP14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 VAT1LQ9HCJ6 419 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 PXMP2Q9NR77 195 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 MSRAQ9UJ68 235 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 TAF6LQ9Y6J9 622 aa14.28□□□□□ -0.12
MSH5-SAPCD1-205ENST00000476085 ZBTB5O15062 677 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 CYTH3O43739 400 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 GH1P01241 217 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 RFC2P35250 354 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 TROAPQ12815 778 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 SEPT14Q6ZU15 432 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 VSIG10LQ86VR7 867 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PPP1R13LQ8WUF5 828 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 NKX2-4Q9H2Z4 354 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PRDM12Q9H4Q4 367 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 SENP2Q9HC62 589 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PCDHA11Q9Y5I1 949 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 SLC4A7Q9Y6M7 1214 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PTPRSQ13332 1948 aa14.27□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 HAS3O00219 553 aa14.26□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 SGSM2O43147 1006 aa14.26□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 RBL2Q08999 1139 aa14.26□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 GRM4Q14833 912 aa14.26□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 ARHGEF16Q5VV41 709 aa14.26□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 IGDCC4Q8TDY8 1250 aa14.26□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 MAP4K1Q92918 833 aa14.26□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PDCD2LQ9BRP1 358 aa14.26□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 U3KPZ7 1027 aaPredicted RBP14.26□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PRRC2BQ5JSZ5 2229 aaKnown RBP14.26□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 XIRP2A4UGR9 3374 aa14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 E7EWF7 191 aa14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 CFBP00751 764 aa14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 MYOGP15173 224 aa14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 EIF2AK2P19525 551 aaKnown RBP14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 CASTP20810 708 aaKnown RBP14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 RABGGTBP53611 331 aa14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 ANTXR2P58335 489 aa14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 GDF6Q6KF10 455 aaPredicted RBP14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 RUFY2Q8WXA3 655 aa14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 DHX38Q92620 1227 aaKnown RBP14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PCDHA1Q9Y5I3 950 aa14.25□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 ATP2A2P16615 1042 aaKnown RBP14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 POU3F3P20264 500 aaPredicted RBP14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 SP2Q02086 613 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 LAMC2Q13753 1193 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PGM5Q15124 567 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PTGISQ16647 500 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 DGKDQ16760 1214 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 FAM47CQ5HY64 1035 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 MYSM1Q5VVJ2 828 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 DEFB128Q7Z7B8 93 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PPTC7Q8NI37 304 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 CAGE1Q8TC20 777 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PHOSPHO2Q8TCD6 241 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PIGSQ96S52 555 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 GAS2L1Q99501 681 aaPredicted RBP14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 SLC28A3Q9HAS3 691 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PRDM6Q9NQX0 595 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 GTF2IRD1Q9UHL9 959 aa14.24□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 FRMPD4Q14CM0 1322 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PNMA6FA0A0J9YX94 578 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 IFIT3O14879 490 aaKnown RBP14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 DHX16O60231 1041 aaKnown RBP14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PPFIA4O75335 1185 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 F2P00734 622 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 CXCL10P02778 98 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 TGFB3P10600 412 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 TRDNQ13061 729 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 BFSP2Q13515 415 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 TRAF7Q6Q0C0 670 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 MB21D2Q8IYB1 491 aaPredicted RBP14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 IL31RAQ8NI17 732 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 AFAP1L1Q8TED9 768 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 MAP3K14Q99558 947 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 HDAC6Q9UBN7 1215 aa14.23□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 HOXA13P31271 388 aaPredicted RBP14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PSEN2P49810 448 aa14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 HIC1Q14526 733 aa14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 TRIM71Q2Q1W2 868 aaKnown RBP14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 HSDL1Q3SXM5 330 aa14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 CELF3Q5SZQ8 465 aaKnown RBP14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 KCNV1Q6PIU1 500 aa14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 CHST3Q7LGC8 479 aa14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 RETREG2Q8NC44 543 aa14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 NCOA7Q8NI08 942 aa14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 SLC9A7Q96T83 725 aa14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 MTA3Q9BTC8 594 aa14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 MRVI1Q9Y6F6 885 aa14.22□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 ZBBXA8MT70 800 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 GCOM1H8Y6P7 765 aaPredicted RBP14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 BAIAP3O94812 1187 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 PARNO95453 639 aaKnown RBP14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 POLR2MP0CAP2 368 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 ACTN1P12814 892 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 SELPP16109 830 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 SMARCA1P28370 1054 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 HOXC8P31273 242 aa14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 MRPS9P82933 396 aaKnown RBP14.21□□□□□ -0.13
MSH5-SAPCD1-205ENST00000476085 TRAF1Q13077 416 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms