RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 SREBF1P36956 1147 aa9.63□□□□□ -0.87
TRIM48-201ENST00000417545 PWP2Q15269 919 aaKnown RBP9.63□□□□□ -0.87
TRIM48-201ENST00000417545 FOXD4L6Q3SYB3 417 aaPredicted RBP9.63□□□□□ -0.87
TRIM48-201ENST00000417545 XRRA1Q6P2D8 792 aa9.63□□□□□ -0.87
TRIM48-201ENST00000417545 FOXD4L3Q6VB84 417 aaPredicted RBP9.63□□□□□ -0.87
TRIM48-201ENST00000417545 ARMCX2Q7L311 632 aa9.63□□□□□ -0.87
TRIM48-201ENST00000417545 EEPD1Q7L9B9 569 aa9.63□□□□□ -0.87
TRIM48-201ENST00000417545 OTOP1Q7RTM1 612 aa9.63□□□□□ -0.87
TRIM48-201ENST00000417545 CTU1Q7Z7A3 348 aaKnown RBP9.63□□□□□ -0.87
TRIM48-201ENST00000417545 ZNF467Q7Z7K2 595 aaPredicted RBP9.63□□□□□ -0.87
TRIM48-201ENST00000417545 NPLOC4Q8TAT6 608 aa9.63□□□□□ -0.87
TRIM48-201ENST00000417545 SHISA4Q96DD7 197 aa9.63□□□□□ -0.87
TRIM48-201ENST00000417545 ZNF396Q96N95 335 aaPredicted RBP9.63□□□□□ -0.87
TRIM48-201ENST00000417545 PDCD2LQ9BRP1 358 aa9.63□□□□□ -0.87
TRIM48-201ENST00000417545 TINF2Q9BSI4 451 aa9.63□□□□□ -0.87
TRIM48-201ENST00000417545 MCM3APO60318 1980 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 KIF28PB7ZC32 967 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 XRCC5P13010 732 aaKnown RBP9.62□□□□□ -0.87
TRIM48-201ENST00000417545 GCFC2P16383 781 aaKnown RBP9.62□□□□□ -0.87
TRIM48-201ENST00000417545 U2AF2P26368 475 aaKnown RBP eCLIP9.62□□□□□ -0.87
TRIM48-201ENST00000417545 CNGA1P29973 690 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 SETQ01105 290 aaPredicted RBP9.62□□□□□ -0.87
TRIM48-201ENST00000417545 RILPL1Q5EBL4 403 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 TTC38Q5R3I4 469 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 PCNX4Q63HM2 1172 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 OLFML2BQ68BL8 750 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 MSL3Q8N5Y2 521 aaKnown RBP9.62□□□□□ -0.87
TRIM48-201ENST00000417545 SLAIN1Q8ND83 568 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.62□□□□□ -0.87
TRIM48-201ENST00000417545 RTEL1Q9NZ71 1219 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 CEP131Q9UPN4 1083 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 SYNGAP1Q96PV0 1343 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 LRRC37A2A6NM11 1700 aa9.62□□□□□ -0.87
TRIM48-201ENST00000417545 KIAA1217Q5T5P2 1943 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 FAM205CA6NFA0 338 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 EIF3JO75822 258 aaKnown RBP9.61□□□□□ -0.87
TRIM48-201ENST00000417545 BAG4O95429 457 aaKnown RBP9.61□□□□□ -0.87
TRIM48-201ENST00000417545 HMGCRP04035 888 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 HOXC6P09630 235 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 ELNP15502 786 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 GRK4P32298 578 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 MCM7P33993 719 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 TRAPPC10P48553 1259 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 USP11P51784 963 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 RESTQ13127 1097 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 IRF5Q13568 498 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 NPY5RQ15761 445 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 CCL14Q16627 93 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 SLC9C1Q4G0N8 1177 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 PRR16Q569H4 304 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 MYSM1Q5VVJ2 828 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 SEPT14Q6ZU15 432 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 PLA2G4DQ86XP0 818 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 FBXO16Q8IX29 292 aaPredicted RBP9.61□□□□□ -0.87
TRIM48-201ENST00000417545 ZFP91Q96JP5 570 aaPredicted RBP9.61□□□□□ -0.87
TRIM48-201ENST00000417545 CDHR1Q96JP9 859 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 VTA1Q9NP79 307 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 RTN4Q9NQC3 1192 aaKnown RBP9.61□□□□□ -0.87
TRIM48-201ENST00000417545 DDX25Q9UHL0 483 aaKnown RBP9.61□□□□□ -0.87
TRIM48-201ENST00000417545 GJD2Q9UKL4 321 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 PTPN22Q9Y2R2 807 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 PTCH2Q9Y6C5 1203 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 MRVI1Q9Y6F6 885 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 RPTORQ8N122 1335 aa9.61□□□□□ -0.87
TRIM48-201ENST00000417545 M0R2N6 131 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 ADAMTS3O15072 1205 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 NEMFO60524 1076 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 BRD1O95696 1058 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 BMP15O95972 392 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 CYP2C19P33261 490 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 CEBPZQ03701 1054 aaKnown RBP9.6□□□□□ -0.87
TRIM48-201ENST00000417545 MTMR1Q13613 665 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 PKP1Q13835 747 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 TTLL4Q14679 1199 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 SF3A1Q15459 793 aaKnown RBP9.6□□□□□ -0.87
TRIM48-201ENST00000417545 ZNF174Q15697 407 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 PKN2Q16513 984 aaKnown RBP9.6□□□□□ -0.87
TRIM48-201ENST00000417545 CEP55Q53EZ4 464 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 KCNV1Q6PIU1 500 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 IL31RAQ8NI17 732 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 TRIB2Q92519 343 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 USP6NLQ92738 828 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 MXRA8Q9BRK3 442 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 ABHD16BQ9H3Z7 469 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 PKD2L1Q9P0L9 805 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 CFAP45Q9UL16 551 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 FRMPD4Q14CM0 1322 aa9.6□□□□□ -0.87
TRIM48-201ENST00000417545 FIBPO43427 364 aa9.59□□□□□ -0.87
TRIM48-201ENST00000417545 TDP2O95551 362 aa9.59□□□□□ -0.87
TRIM48-201ENST00000417545 CYP3A4P08684 503 aa9.59□□□□□ -0.87
TRIM48-201ENST00000417545 KRT85P78386 507 aa9.59□□□□□ -0.87
TRIM48-201ENST00000417545 ORC2Q13416 577 aaPredicted RBP9.59□□□□□ -0.87
TRIM48-201ENST00000417545 ACVR2BQ13705 512 aa9.59□□□□□ -0.87
TRIM48-201ENST00000417545 STK38Q15208 465 aa9.59□□□□□ -0.87
TRIM48-201ENST00000417545 CALCRLQ16602 461 aa9.59□□□□□ -0.87
TRIM48-201ENST00000417545 TMEM266Q2M3C6 531 aa9.59□□□□□ -0.87
TRIM48-201ENST00000417545 EARS2Q5JPH6 523 aaKnown RBP9.59□□□□□ -0.87
TRIM48-201ENST00000417545 FBXO46Q6PJ61 603 aaPredicted RBP9.59□□□□□ -0.87
TRIM48-201ENST00000417545 MOXD1Q6UVY6 613 aa9.59□□□□□ -0.87
TRIM48-201ENST00000417545 MAMDC4Q6UXC1 1216 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms