RNA–Protein interactions for RNA: ENST00000417508.1

VPS16-204, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-204ENST00000417508 AFG1LQ8WV93 481 aa21.35■■□□□ 1.01
VPS16-204ENST00000417508 LZTS2Q9BRK4 669 aa21.35■■□□□ 1.01
VPS16-204ENST00000417508 WNT8AQ9H1J5 351 aa21.35■■□□□ 1.01
VPS16-204ENST00000417508 MYH7BA7E2Y1 1941 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 CYTH3O43739 400 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 DDAH1O94760 285 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 MMP3P08254 477 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 TGFB3P10600 412 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 RFC2P35250 354 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 GNAQP50148 359 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 SLC35G1Q2M3R5 365 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 CTCFLQ8NI51 663 aaPredicted RBP21.34■■□□□ 1.01
VPS16-204ENST00000417508 TIFAQ96CG3 184 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 TMEM87BQ96K49 555 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 ESYT1Q9BSJ8 1104 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 LSG1Q9H089 658 aaKnown RBP21.34■■□□□ 1.01
VPS16-204ENST00000417508 MRVI1Q9Y6F6 885 aa21.34■■□□□ 1.01
VPS16-204ENST00000417508 PITPNM1O00562 1244 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 CYP2C9P11712 490 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 BFSP2Q13515 415 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 PGM5Q15124 567 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 RAB30Q15771 203 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 CENPQQ7L2Z9 268 aaPredicted RBP21.33■■□□□ 1.01
VPS16-204ENST00000417508 SESTD1Q86VW0 696 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 DHX37Q8IY37 1157 aaKnown RBP21.33■■□□□ 1.01
VPS16-204ENST00000417508 RETREG2Q8NC44 543 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 SPZ1Q9BXG8 430 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 ZNF576Q9H609 170 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 LY9Q9HBG7 655 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 MSRAQ9UJ68 235 aa21.33■■□□□ 1.01
VPS16-204ENST00000417508 MYCLP12524 364 aaPredicted RBP21.32■■□□□ 1
VPS16-204ENST00000417508 HOXA13P31271 388 aaPredicted RBP21.32■■□□□ 1
VPS16-204ENST00000417508 LIFRP42702 1097 aa21.32■■□□□ 1
VPS16-204ENST00000417508 BMP2KLQ5H9B9 411 aa21.32■■□□□ 1
VPS16-204ENST00000417508 ZNF654Q8IZM8 581 aa21.32■■□□□ 1
VPS16-204ENST00000417508 PPTC7Q8NI37 304 aa21.32■■□□□ 1
VPS16-204ENST00000417508 PBX4Q9BYU1 374 aa21.32■■□□□ 1
VPS16-204ENST00000417508 NOD1Q9Y239 953 aa21.32■■□□□ 1
VPS16-204ENST00000417508 PRC1O43663 620 aa21.31■■□□□ 1
VPS16-204ENST00000417508 PPFIA4O75335 1185 aa21.31■■□□□ 1
VPS16-204ENST00000417508 STAM2O75886 525 aa21.31■■□□□ 1
VPS16-204ENST00000417508 CALM1P0DP23 149 aa21.31■■□□□ 1
VPS16-204ENST00000417508 CALM2P0DP24 149 aa21.31■■□□□ 1
VPS16-204ENST00000417508 CALM3P0DP25 149 aa21.31■■□□□ 1
VPS16-204ENST00000417508 CCND2P30279 289 aa21.31■■□□□ 1
VPS16-204ENST00000417508 NECTIN1Q15223 517 aa21.31■■□□□ 1
VPS16-204ENST00000417508 OTOP2Q7RTS6 562 aa21.31■■□□□ 1
VPS16-204ENST00000417508 CCDC155Q8N6L0 562 aa21.31■■□□□ 1
VPS16-204ENST00000417508 MYLIPQ8WY64 445 aa21.31■■□□□ 1
VPS16-204ENST00000417508 RRP36Q96EU6 259 aaKnown RBP21.31■■□□□ 1
VPS16-204ENST00000417508 SCLYQ96I15 445 aa21.31■■□□□ 1
VPS16-204ENST00000417508 KATNAL1Q9BW62 490 aa21.31■■□□□ 1
VPS16-204ENST00000417508 DLL1O00548 723 aa21.3■■□□□ 1
VPS16-204ENST00000417508 SLC27A2O14975 620 aa21.3■■□□□ 1
VPS16-204ENST00000417508 RGS20O76081 388 aa21.3■■□□□ 1
VPS16-204ENST00000417508 FOSL2P15408 326 aa21.3■■□□□ 1
VPS16-204ENST00000417508 PTGISQ16647 500 aa21.3■■□□□ 1
VPS16-204ENST00000417508 MYSM1Q5VVJ2 828 aa21.3■■□□□ 1
VPS16-204ENST00000417508 FCHSD1Q86WN1 690 aa21.3■■□□□ 1
VPS16-204ENST00000417508 MAFAQ8NHW3 353 aaPredicted RBP21.3■■□□□ 1
VPS16-204ENST00000417508 KAT2BQ92831 832 aa21.3■■□□□ 1
VPS16-204ENST00000417508 CXXC1Q9P0U4 656 aaPredicted RBP21.3■■□□□ 1
VPS16-204ENST00000417508 SLC4A7Q9Y6M7 1214 aa21.3■■□□□ 1
VPS16-204ENST00000417508 TRIP12Q14669 1992 aaPredicted RBP21.29■■□□□ 1
VPS16-204ENST00000417508 CCDC69A6NI79 296 aa21.29■■□□□ 1
VPS16-204ENST00000417508 GRXCR1A8MXD5 290 aa21.29■■□□□ 1
VPS16-204ENST00000417508 IQCF3P0C7M6 154 aa21.29■■□□□ 1
VPS16-204ENST00000417508 ACTN1P12814 892 aa21.29■■□□□ 1
VPS16-204ENST00000417508 HOXD8P13378 290 aaPredicted RBP21.29■■□□□ 1
VPS16-204ENST00000417508 GRIN2CQ14957 1233 aa21.29■■□□□ 1
VPS16-204ENST00000417508 CELF3Q5SZQ8 465 aaKnown RBP21.29■■□□□ 1
VPS16-204ENST00000417508 RNF20Q5VTR2 975 aa21.29■■□□□ 1
VPS16-204ENST00000417508 CREB3L3Q68CJ9 461 aa21.29■■□□□ 1
VPS16-204ENST00000417508 NFXL1Q6ZNB6 911 aa21.29■■□□□ 1
VPS16-204ENST00000417508 CAGE1Q8TC20 777 aa21.29■■□□□ 1
VPS16-204ENST00000417508 ANO2Q9NQ90 1003 aa21.29■■□□□ 1
VPS16-204ENST00000417508 SEC63Q9UGP8 760 aaKnown RBP21.29■■□□□ 1
VPS16-204ENST00000417508 CUL9Q8IWT3 2517 aa21.29■■□□□ 1
VPS16-204ENST00000417508 SH2B2O14492 632 aaPredicted RBP21.28■■□□□ 1
VPS16-204ENST00000417508 PARNO95453 639 aaKnown RBP21.28■■□□□ 1
VPS16-204ENST00000417508 CHMP4BP1P59074 171 aa21.28■■□□□ 1
VPS16-204ENST00000417508 GNPTABQ3T906 1256 aa21.28■■□□□ 1
VPS16-204ENST00000417508 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.28■■□□□ 1
VPS16-204ENST00000417508 C7orf31Q8N865 590 aa21.28■■□□□ 1
VPS16-204ENST00000417508 CUL5Q93034 780 aa21.28■■□□□ 1
VPS16-204ENST00000417508 VWCEQ96DN2 955 aa21.28■■□□□ 1
VPS16-204ENST00000417508 PBX2P40425 430 aa21.27■■□□□ 1
VPS16-204ENST00000417508 PSEN2P49810 448 aa21.27■■□□□ 1
VPS16-204ENST00000417508 XRRA1Q6P2D8 792 aa21.27■■□□□ 1
VPS16-204ENST00000417508 AFAP1L1Q8TED9 768 aa21.27■■□□□ 1
VPS16-204ENST00000417508 SPATA33Q96N06 139 aa21.27■■□□□ 1
VPS16-204ENST00000417508 GTF2IRD1Q9UHL9 959 aa21.27■■□□□ 1
VPS16-204ENST00000417508 FRMPD4Q14CM0 1322 aa21.27■□□□□ 0.99
VPS16-204ENST00000417508 HAS3O00219 553 aa21.26■□□□□ 0.99
VPS16-204ENST00000417508 PIK3CDO00329 1044 aa21.26■□□□□ 0.99
VPS16-204ENST00000417508 GGPS1O95749 300 aa21.26■□□□□ 0.99
VPS16-204ENST00000417508 F2P00734 622 aa21.26■□□□□ 0.99
VPS16-204ENST00000417508 ICAM3P32942 547 aa21.26■□□□□ 0.99
VPS16-204ENST00000417508 GDF6Q6KF10 455 aaPredicted RBP21.26■□□□□ 0.99
VPS16-204ENST00000417508 DEFB128Q7Z7B8 93 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms