RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W SOV1Q04748 898 aa3.25□□□□□ -1.89
UPF3YGR072W RBS1Q05672 457 aaKnown RBP3.25□□□□□ -1.89
UPF3YGR072W COS7Q07788 383 aa3.25□□□□□ -1.89
UPF3YGR072W EDE1P34216 1381 aa3.25□□□□□ -1.89
UPF3YGR072W PEP4P07267 405 aaKnown RBP3.24□□□□□ -1.89
UPF3YGR072W IDH2P28241 369 aaKnown RBP3.24□□□□□ -1.89
UPF3YGR072W GYP6P32806 458 aa3.24□□□□□ -1.89
UPF3YGR072W YPK3P38070 525 aa3.24□□□□□ -1.89
UPF3YGR072W ARA1P38115 344 aa3.24□□□□□ -1.89
UPF3YGR072W ARP1P38696 384 aa3.24□□□□□ -1.89
UPF3YGR072W HXT9P40885 567 aa3.24□□□□□ -1.89
UPF3YGR072W IAH1P41734 238 aa3.24□□□□□ -1.89
UPF3YGR072W SAD1P43589 448 aa3.24□□□□□ -1.89
UPF3YGR072W AIM22P47051 409 aa3.24□□□□□ -1.89
UPF3YGR072W OCA1P50946 238 aaPredicted RBP3.24□□□□□ -1.89
UPF3YGR072W ALT2P52892 507 aa3.24□□□□□ -1.89
UPF3YGR072W YGL108CP53139 140 aa3.24□□□□□ -1.89
UPF3YGR072W ZPR1P53303 486 aaKnown RBP3.24□□□□□ -1.89
UPF3YGR072W HEF3P53978 1044 aaKnown RBP3.24□□□□□ -1.89
UPF3YGR072W TAP42Q04372 366 aa3.24□□□□□ -1.89
UPF3YGR072W GLO2Q05584 274 aa3.24□□□□□ -1.89
UPF3YGR072W FMP45Q07651 309 aa3.24□□□□□ -1.89
UPF3YGR072W MED2Q12124 431 aa3.24□□□□□ -1.89
UPF3YGR072W PDH1Q12428 516 aaKnown RBP3.24□□□□□ -1.89
UPF3YGR072W ARP6Q12509 438 aa3.24□□□□□ -1.89
UPF3YGR072W CTF3Q12748 733 aa3.24□□□□□ -1.89
UPF3YGR072W YMR230W-AQ3E7B5 62 aa3.24□□□□□ -1.89
UPF3YGR072W ELO2P25358 347 aa3.23□□□□□ -1.89
UPF3YGR072W GID7P25569 745 aa3.23□□□□□ -1.89
UPF3YGR072W ERV1P27882 189 aa3.23□□□□□ -1.89
UPF3YGR072W VPH1P32563 840 aaKnown RBP3.23□□□□□ -1.89
UPF3YGR072W YNK1P36010 153 aaKnown RBP3.23□□□□□ -1.89
UPF3YGR072W PIM1P36775 1133 aa3.23□□□□□ -1.89
UPF3YGR072W DUG2P38149 878 aa3.23□□□□□ -1.89
UPF3YGR072W TCM62P38228 572 aaKnown RBP3.23□□□□□ -1.89
UPF3YGR072W RRP3P38712 501 aaKnown RBP3.23□□□□□ -1.89
UPF3YGR072W APE4P38821 490 aa3.23□□□□□ -1.89
UPF3YGR072W POP1P41812 875 aa3.23□□□□□ -1.89
UPF3YGR072W YJR154WP47181 346 aa3.23□□□□□ -1.89
UPF3YGR072W YGR111WP53265 400 aa3.23□□□□□ -1.89
UPF3YGR072W OAZ1Q02803 292 aa3.23□□□□□ -1.89
UPF3YGR072W GSH2Q08220 491 aa3.23□□□□□ -1.89
UPF3YGR072W YOR365CQ08844 703 aa3.23□□□□□ -1.89
UPF3YGR072W VPS54Q12071 889 aa3.23□□□□□ -1.89
UPF3YGR072W YLR112WQ12130 139 aa3.23□□□□□ -1.89
UPF3YGR072W NCE102Q12207 173 aaRIP-Chip data3.23□□□□□ -1.89not detected
UPF3YGR072W PAR32Q12515 295 aaKnown RBP3.23□□□□□ -1.89
UPF3YGR072W SPT7P35177 1332 aa3.22□□□□□ -1.89
UPF3YGR072W RPL42AP0CX27 106 aaKnown RBP3.22□□□□□ -1.89
UPF3YGR072W RPL42BP0CX28 106 aaKnown RBP3.22□□□□□ -1.89
UPF3YGR072W APE1P14904 514 aa3.22□□□□□ -1.89
UPF3YGR072W PPZ1P26570 692 aa3.22□□□□□ -1.89
UPF3YGR072W MCM4P30665 933 aaKnown RBP3.22□□□□□ -1.89
UPF3YGR072W PDR3P33200 976 aa3.22□□□□□ -1.89
UPF3YGR072W LTV1P34078 463 aa3.22□□□□□ -1.89
UPF3YGR072W PHD1P36093 366 aa3.22□□□□□ -1.89
UPF3YGR072W MMS4P38257 691 aa3.22□□□□□ -1.89
UPF3YGR072W VHC1P38329 1120 aa3.22□□□□□ -1.89
UPF3YGR072W LEU5P38702 357 aa3.22□□□□□ -1.89
UPF3YGR072W TIF4631P39935 952 aaKnown RBP3.22□□□□□ -1.89
UPF3YGR072W SEC28P40509 296 aaKnown RBP3.22□□□□□ -1.89
UPF3YGR072W TCB2P48231 1178 aa3.22□□□□□ -1.89
UPF3YGR072W RHO4Q00246 291 aa3.22□□□□□ -1.89
UPF3YGR072W BET4Q00618 327 aa3.22□□□□□ -1.89
UPF3YGR072W YPL014WQ02606 381 aa3.22□□□□□ -1.89
UPF3YGR072W SIL1Q08199 421 aa3.22□□□□□ -1.89
UPF3YGR072W DCI1Q08558 271 aa3.22□□□□□ -1.89
UPF3YGR072W HIP1P06775 603 aa3.21□□□□□ -1.9
UPF3YGR072W RAD52P06778 471 aaKnown RBP3.21□□□□□ -1.9
UPF3YGR072W EXO70P19658 623 aa3.21□□□□□ -1.9
UPF3YGR072W TYR1P20049 452 aa3.21□□□□□ -1.9
UPF3YGR072W BRF1P29056 596 aa3.21□□□□□ -1.9
UPF3YGR072W MSN2P33748 704 aa3.21□□□□□ -1.9
UPF3YGR072W MIC60P36112 540 aa3.21□□□□□ -1.9
UPF3YGR072W RXT2P38255 430 aa3.21□□□□□ -1.9
UPF3YGR072W RRT2P38332 387 aa3.21□□□□□ -1.9
UPF3YGR072W ERG7P38604 731 aa3.21□□□□□ -1.9
UPF3YGR072W RTS2P40962 232 aa3.21□□□□□ -1.9
UPF3YGR072W LCB2P40970 561 aa3.21□□□□□ -1.9
UPF3YGR072W PKP2P53170 491 aa3.21□□□□□ -1.9
UPF3YGR072W NCS2P53923 493 aaPredicted RBP3.21□□□□□ -1.9
UPF3YGR072W SLG1P54867 378 aa3.21□□□□□ -1.9
UPF3YGR072W NUP100Q02629 959 aa3.21□□□□□ -1.9
UPF3YGR072W SMA1Q02651 245 aa3.21□□□□□ -1.9
UPF3YGR072W PEX25Q02969 394 aa3.21□□□□□ -1.9
UPF3YGR072W DIG1Q03063 452 aaKnown RBP3.21□□□□□ -1.9
UPF3YGR072W IZH1Q03419 316 aa3.21□□□□□ -1.9
UPF3YGR072W EKI1Q03764 534 aa3.21□□□□□ -1.9
UPF3YGR072W YMR130WQ04223 302 aa3.21□□□□□ -1.9
UPF3YGR072W RSF1Q05043 376 aa3.21□□□□□ -1.9
UPF3YGR072W SPE3Q12074 293 aaKnown RBP3.21□□□□□ -1.9
UPF3YGR072W CFT2Q12102 859 aaPredicted RBP3.21□□□□□ -1.9
UPF3YGR072W GPM3Q12326 303 aa3.21□□□□□ -1.9
UPF3YGR072W ISN1Q99312 450 aa3.21□□□□□ -1.9
UPF3YGR072W HNM1P19807 563 aa3.2□□□□□ -1.9
UPF3YGR072W URA4P20051 364 aa3.2□□□□□ -1.9
UPF3YGR072W YIM1P28625 365 aa3.2□□□□□ -1.9
UPF3YGR072W UTR4P32626 227 aa3.2□□□□□ -1.9
UPF3YGR072W VPS17P32913 551 aa3.2□□□□□ -1.9
UPF3YGR072W SLM4P38247 162 aa3.2□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms