RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	ADE16	P54113	591 aa	Known RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	SRL4	Q03085	281 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	POS5	Q06892	414 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	VAM3	Q12241	283 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	PAA1	Q12447	191 aa	Known RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	AIM45	Q12480	344 aa	Known RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	SSA3	P09435	649 aa	Known RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	RPL31B	P0C2H9	113 aa	Known RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	SEC12	P11655	471 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	RAP1	P11938	827 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	KGD2	P19262	463 aa	Predicted RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	CNA1	P23287	553 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
CDC9	YDL164C	SRB4	P32569	687 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	EMP70	P32802	667 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	ECM4	P36156	370 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	TAE1	P38340	232 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	ERG7	P38604	731 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	YER085C	P40058	173 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	MPS3	P47069	682 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	HSH155	P49955	971 aa	Known RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	ROG1	P53118	685 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	YGR126W	P53274	230 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	CAF130	P53280	1122 aa	Predicted RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	CAB5	Q03941	241 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	SNT309	Q06091	175 aa	Predicted RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	YPR078C	Q06813	372 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	MLH3	Q12083	715 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	ATG31	Q12421	196 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	STE2	D6VTK4	431 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	YPR089W	O13585	888 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	RIP1	P08067	215 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	KIN2	P13186	1147 aa	Known RBP	4.22	□□□□□ -1.73
CDC9	YDL164C	RSR1	P13856	272 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	RPC34	P32910	317 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.22	□□□□□ -1.73	not detected
CDC9	YDL164C	ELF1	P36053	145 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	GMH1	P36125	273 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	AGP2	P38090	596 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	YBR053C	P38235	358 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	SWC5	P38326	303 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	SAF1	P38352	637 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	SIP3	P38717	1229 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	STN1	P38960	494 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	ICP55	P40051	511 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	SSY1	Q03770	852 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	SWM1	Q12379	170 aa		4.22	□□□□□ -1.73
CDC9	YDL164C	CFT1	Q06632	1357 aa	Known RBP	4.22	□□□□□ -1.73
CDC9	YDL164C	YLL067C	Q07888	1374 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	CHO1	P08456	276 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	VMA16	P23968	213 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	ADH7	P25377	361 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	IMG1	P25626	169 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	FRE1	P32791	686 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	YKR015C	P36111	568 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	SPP381	P38282	291 aa	Predicted RBP	4.21	□□□□□ -1.73
CDC9	YDL164C	DIA4	P38705	446 aa	Predicted RBP	4.21	□□□□□ -1.73
CDC9	YDL164C	ECM10	P39987	644 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	DIA3	P52290	468 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	YGL108C	P53139	140 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	GTF1	P53260	183 aa	Predicted RBP	4.21	□□□□□ -1.73
CDC9	YDL164C	PRM1	P53835	661 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	UBP16	Q02863	499 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	RSM24	Q03976	319 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	YMR130W	Q04223	302 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	RRP45	Q05636	305 aa	Known RBP	4.21	□□□□□ -1.73
CDC9	YDL164C	DIS3	Q08162	1001 aa	Known RBP	4.21	□□□□□ -1.73
CDC9	YDL164C	YOL107W	Q12239	342 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	MDM20	Q12387	796 aa	Known RBP	4.21	□□□□□ -1.73
CDC9	YDL164C	AHC1	Q12433	566 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	YER175W-A	Q8TGU4	54 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	MTR10	Q99189	972 aa		4.21	□□□□□ -1.73
CDC9	YDL164C	HIS5	P07172	385 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	YUR1	P26725	428 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	PSO2	P30620	661 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	RAD23	P32628	398 aa	Known RBP	4.21	□□□□□ -1.74
CDC9	YDL164C	YSC83	P32792	385 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	YHR045W	P38775	560 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	LIA1	P47120	325 aa	Known RBP	4.21	□□□□□ -1.74
CDC9	YDL164C	YGR035C	P53222	116 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	YGR117C	P53270	476 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	DCS1	Q06151	350 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	BCP1	Q06338	283 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	INP53	Q12271	1107 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	NPC2	Q12408	173 aa		4.21	□□□□□ -1.74
CDC9	YDL164C	PUT2	P07275	575 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	RPS16A	P0CX51	143 aa	Known RBP	4.2	□□□□□ -1.74
CDC9	YDL164C	RPS16B	P0CX52	143 aa	Known RBP	4.2	□□□□□ -1.74
CDC9	YDL164C	DAL2	P25335	343 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	RIM1	P32445	135 aa	Known RBP	4.2	□□□□□ -1.74
CDC9	YDL164C	SIP1	P32578	815 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	SUA5	P32579	426 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	YFL066C	P43538	392 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	OTU1	P43558	301 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	DPB11	P47027	764 aa	Predicted RBP	4.2	□□□□□ -1.74
CDC9	YDL164C	YNL144C	P53907	740 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	PET117	Q02771	107 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	PNG1	Q02890	363 aa		4.2	□□□□□ -1.74
CDC9	YDL164C	CTK1	Q03957	528 aa	Known RBP	4.2	□□□□□ -1.74
CDC9	YDL164C	RTN1	Q04947	295 aa	Known RBP	4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 23.6 ms