RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 BICD2Q8TD16 824 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 U2AF1L4Q8WU68 220 aaKnown RBP10.99□□□□□ -0.65
CCDC40-214ENST00000575431 GPKOWQ92917 476 aaPredicted RBP eCLIP10.99□□□□□ -0.65
CCDC40-214ENST00000575431 PHKBQ93100 1093 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 DEFB118Q96PH6 123 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 TAAR1Q96RJ0 339 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 LLPHQ9BRT6 129 aaKnown RBP10.99□□□□□ -0.65
CCDC40-214ENST00000575431 ZMYND12Q9H0C1 365 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 EHMT1Q9H9B1 1298 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 C6orf50Q9HD87 102 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 RIC8AQ9NPQ8 531 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 DDX20Q9UHI6 824 aaKnown RBP10.99□□□□□ -0.65
CCDC40-214ENST00000575431 FAM184BQ9ULE4 1060 aa10.99□□□□□ -0.65
CCDC40-214ENST00000575431 STXBP3O00186 592 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 MEIS2O14770 477 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 EIF3JO75822 258 aaKnown RBP10.98□□□□□ -0.65
CCDC40-214ENST00000575431 STAM2O75886 525 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 MYCP01106 439 aaPredicted RBP10.98□□□□□ -0.65
CCDC40-214ENST00000575431 NR3C2P08235 984 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 ZNF865P0CJ78 1059 aaPredicted RBP10.98□□□□□ -0.65
CCDC40-214ENST00000575431 CCND3P30281 292 aaPredicted RBP10.98□□□□□ -0.65
CCDC40-214ENST00000575431 AP3B2Q13367 1082 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 STXBP2Q15833 593 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 IQSEC1Q6DN90 963 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 GALNT17Q6IS24 598 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 NOL8Q76FK4 1167 aaKnown RBP10.98□□□□□ -0.65
CCDC40-214ENST00000575431 ANKLE1Q8NAG6 615 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 CRISPLD2Q9H0B8 497 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 PXMP2Q9NR77 195 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 COL20A1Q9P218 1284 aa10.98□□□□□ -0.65
CCDC40-214ENST00000575431 ZHX1Q9UKY1 873 aaPredicted RBP10.98□□□□□ -0.65
CCDC40-214ENST00000575431 LCTP09848 1927 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 TFRCP02786 760 aaKnown RBP10.97□□□□□ -0.65
CCDC40-214ENST00000575431 RARBP10826 455 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 HOXA13P31271 388 aaPredicted RBP10.97□□□□□ -0.65
CCDC40-214ENST00000575431 HMGN5P82970 282 aaKnown RBP10.97□□□□□ -0.65
CCDC40-214ENST00000575431 PRAMEF19Q5SWL8 479 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 KCNV1Q6PIU1 500 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 USP17L6PQ6QN14 398 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 VSIG10LQ86VR7 867 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 FCHSD1Q86WN1 690 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 NECAB1Q8N987 351 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 ARRDC4Q8NCT1 418 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 TRPV1Q8NER1 839 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 PURBQ96QR8 312 aaKnown RBP10.97□□□□□ -0.65
CCDC40-214ENST00000575431 PDCD2LQ9BRP1 358 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 KATNBL1Q9H079 304 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 ORC3Q9UBD5 711 aaPredicted RBP10.97□□□□□ -0.65
CCDC40-214ENST00000575431 OGDHLQ9ULD0 1010 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 Q9Y3F1 56 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 ASTN1O14525 1302 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 FRMPD4Q14CM0 1322 aa10.97□□□□□ -0.65
CCDC40-214ENST00000575431 RBM47A0AV96 593 aaKnown RBP10.96□□□□□ -0.65
CCDC40-214ENST00000575431 NKRFO15226 690 aaKnown RBP eCLIP10.96□□□□□ -0.65
CCDC40-214ENST00000575431 DUSP11O75319 330 aaKnown RBP10.96□□□□□ -0.65
CCDC40-214ENST00000575431 EIF2AK2P19525 551 aaKnown RBP10.96□□□□□ -0.65
CCDC40-214ENST00000575431 CCND2P30279 289 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 NLRP5P59047 1200 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 TNFAIP2Q03169 654 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 PGM5Q15124 567 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 CCDC144BQ3MJ40 725 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 LHX8Q68G74 356 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 TYW1BQ6NUM6 668 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 SCFD2Q8WU76 684 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 SPC25Q9HBM1 224 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 PCDHA6Q9UN73 950 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 KIF3AQ9Y496 699 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 PCDHA8Q9Y5H6 950 aa10.96□□□□□ -0.65
CCDC40-214ENST00000575431 LARGE1O95461 756 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 CTDNEP1O95476 244 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 TGFB3P10600 412 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 CLK2P49760 499 aaKnown RBP10.95□□□□□ -0.66
CCDC40-214ENST00000575431 SOX10P56693 466 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 TRIM29Q14134 588 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 TTLL4Q14679 1199 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 GNPTABQ3T906 1256 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 PCNX4Q63HM2 1172 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 TAPT1Q6NXT6 567 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 CCDC83Q8IWF9 413 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 REXO1Q8N1G1 1221 aaKnown RBP10.95□□□□□ -0.66
CCDC40-214ENST00000575431 NSUN7Q8NE18 718 aaKnown RBP10.95□□□□□ -0.66
CCDC40-214ENST00000575431 XPNPEP3Q9NQH7 507 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 VPS54Q9P1Q0 977 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 PCDHA4Q9UN74 947 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 MCM3APO60318 1980 aa10.95□□□□□ -0.66
CCDC40-214ENST00000575431 POTEFA5A3E0 1075 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 MAFGO15525 162 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 MYCLP12524 364 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-214ENST00000575431 ADCYAP1R1P41586 468 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 NKX3-2P78367 333 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 DUSP28Q4G0W2 176 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 EEPD1Q7L9B9 569 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 RNF180Q86T96 592 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 NLRX1Q86UT6 975 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 FBXO16Q8IX29 292 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-214ENST00000575431 BLIDQ8IZY5 108 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 DAGLBQ8NCG7 672 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 TMX3Q96JJ7 454 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 CDHR1Q96JP9 859 aa10.94□□□□□ -0.66
CCDC40-214ENST00000575431 ALG1Q9BT22 464 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms