RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 HOXA13P31271 388 aaPredicted RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 KRT2P35908 639 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 RPS6P62753 249 aaKnown RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 LACTBP83111 547 aaPredicted RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 PKP1Q13835 747 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 BAATQ14032 418 aaPredicted RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 SAFBQ15424 915 aaKnown RBP eCLIP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 UBE2SQ16763 222 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 NOM1Q5C9Z4 860 aaKnown RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 WDR78Q5VTH9 848 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 ASTLQ6HA08 431 aaPredicted RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 USP17L6PQ6QN14 398 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 NSMFQ6X4W1 530 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 SLC30A10Q6XR72 485 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 RNF207Q6ZRF8 634 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 GPR142Q7Z601 462 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 CCAR1Q8IX12 1150 aaKnown RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 DIS3L2Q8IYB7 885 aaKnown RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 ABRAQ8N0Z2 381 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 REXO1Q8N1G1 1221 aaKnown RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 ANKRD35Q8N283 1001 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 BICD2Q8TD16 824 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 SYTL5Q8TDW5 730 aaPredicted RBP9.69□□□□□ -0.86
SF3B3-212ENST00000568539 TNFRSF25Q93038 417 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 TMEM260Q9NX78 707 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 CYP39A1Q9NYL5 469 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 COL20A1Q9P218 1284 aa9.69□□□□□ -0.86
SF3B3-212ENST00000568539 DNAJC25-GNG10A0A024R161 153 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 KIF28PB7ZC32 967 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 GPR25O00155 361 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 BRD1O95696 1058 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 FCER1AP12319 257 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 PTPREP23469 700 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 U2AF2P26368 475 aaKnown RBP eCLIP9.68□□□□□ -0.86
SF3B3-212ENST00000568539 CTGFP29279 349 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 ATN1P54259 1190 aaPredicted RBP9.68□□□□□ -0.86
SF3B3-212ENST00000568539 IRX5P78411 483 aaPredicted RBP9.68□□□□□ -0.86
SF3B3-212ENST00000568539 SP3Q02447 781 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 NR5A1Q13285 461 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 AP3B2Q13367 1082 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 KCTD2Q14681 263 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 MCTP2Q6DN12 878 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 PLEKHH3Q7Z736 793 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 RASGRP4Q8TDF6 673 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 MMP19Q99542 508 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 BEGAINQ9BUH8 593 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 FOXP1Q9H334 677 aaPredicted RBP9.68□□□□□ -0.86
SF3B3-212ENST00000568539 BRMS1Q9HCU9 246 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 BIN2Q9UBW5 565 aaPredicted RBP9.68□□□□□ -0.86
SF3B3-212ENST00000568539 PCDHA6Q9UN73 950 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 PCDHA8Q9Y5H6 950 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 IVNS1ABPQ9Y6Y0 642 aa9.68□□□□□ -0.86
SF3B3-212ENST00000568539 SLC15A5A6NIM6 579 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 ATMINO43313 823 aaPredicted RBP9.67□□□□□ -0.86
SF3B3-212ENST00000568539 FOSP01100 380 aaPredicted RBP9.67□□□□□ -0.86
SF3B3-212ENST00000568539 ZSCAN22P10073 491 aaPredicted RBP9.67□□□□□ -0.86
SF3B3-212ENST00000568539 FCGRTP55899 365 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 CAP1Q01518 475 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 RESTQ13127 1097 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 GRB14Q14449 540 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 EARS2Q5JPH6 523 aaKnown RBP9.67□□□□□ -0.86
SF3B3-212ENST00000568539 MORN1Q5T089 497 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 IER5LQ5T953 404 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 JAKMIP3Q5VZ66 844 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 MCTP1Q6DN14 999 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 KRT25Q7Z3Z0 450 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 FCHSD1Q86WN1 690 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 NOSTRINQ8IVI9 506 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 TRIM47Q96LD4 638 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 PURBQ96QR8 312 aaKnown RBP9.67□□□□□ -0.86
SF3B3-212ENST00000568539 ARHGAP39Q9C0H5 1083 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 MCOLN1Q9GZU1 580 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 ZDHHC9Q9Y397 364 aa9.67□□□□□ -0.86
SF3B3-212ENST00000568539 ASTN1O14525 1302 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 FRMPD4Q14CM0 1322 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 RPTORQ8N122 1335 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 CCDC194A0A1B0GVG4 234 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 SOWAHBA6NEL2 793 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 FAM205CA6NFA0 338 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 SPDYE3A6NKU9 549 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 POTEB2H3BUK9 544 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 HAX1O00165 279 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 TNPO2O14787 897 aaKnown RBP9.66□□□□□ -0.86
SF3B3-212ENST00000568539 COBLO75128 1261 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 PGK2P07205 417 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 ADORA2AP29274 412 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 PSMC4P43686 418 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 SOX10P56693 466 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 NUCB2P80303 420 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 CNTN2Q02246 1040 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 GNL2Q13823 731 aaKnown RBP9.66□□□□□ -0.86
SF3B3-212ENST00000568539 KIF22Q14807 665 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 ZNF792Q3KQV3 632 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 PIK3AP1Q6ZUJ8 805 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 FERMT3Q86UX7 667 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 FAM133AQ8N9E0 248 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 ZNF296Q8WUU4 475 aaPredicted RBP9.66□□□□□ -0.86
SF3B3-212ENST00000568539 CRYGNQ8WXF5 182 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 USP6NLQ92738 828 aa9.66□□□□□ -0.86
SF3B3-212ENST00000568539 PGBD1Q96JS3 809 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms