RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 PDLIM7Q9NR12 457 aa9.09□□□□□ -0.95
SMG1-204ENST00000561940 KLHL14Q9P2G3 628 aa9.09□□□□□ -0.95
SMG1-204ENST00000561940 TMEFF2Q9UIK5 374 aaPredicted RBP9.09□□□□□ -0.95
SMG1-204ENST00000561940 CD2APQ9Y5K6 639 aa9.09□□□□□ -0.95
SMG1-204ENST00000561940 C7orf72A4D263 438 aa9.08□□□□□ -0.96
SMG1-204ENST00000561940 CAPNS1P04632 268 aa9.08□□□□□ -0.96
SMG1-204ENST00000561940 VIPR1P32241 457 aa9.08□□□□□ -0.96
SMG1-204ENST00000561940 ERVFRD-1P60508 538 aa9.08□□□□□ -0.96
SMG1-204ENST00000561940 CBX2Q14781 532 aaPredicted RBP9.08□□□□□ -0.96
SMG1-204ENST00000561940 GPATCH3Q96I76 525 aa9.08□□□□□ -0.96
SMG1-204ENST00000561940 TNFRSF12AQ9NP84 129 aa9.08□□□□□ -0.96
SMG1-204ENST00000561940 BTG4Q9NY30 223 aa9.08□□□□□ -0.96
SMG1-204ENST00000561940 TRAV20A0A0B4J274 112 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 NFIBO00712 420 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 CLSTN1O94985 981 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 KRT1P04264 644 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 HOXC12P31275 282 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 RAP1GAPP47736 663 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 HSP90AA2PQ14568 343 aaPredicted RBP9.07□□□□□ -0.96
SMG1-204ENST00000561940 LONRF2Q1L5Z9 754 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 INF2Q27J81 1249 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 ATG14Q6ZNE5 492 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 KRTAP19-1Q8IUB9 90 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 USP33Q8TEY7 942 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 KISS1RQ969F8 398 aaPredicted RBP9.07□□□□□ -0.96
SMG1-204ENST00000561940 FEZ1Q99689 392 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 SIRT5Q9NXA8 310 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 FBLN5Q9UBX5 448 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 HCFC2Q9Y5Z7 792 aa9.07□□□□□ -0.96
SMG1-204ENST00000561940 ARNTLO00327 626 aa9.06□□□□□ -0.96
SMG1-204ENST00000561940 GYS2P54840 703 aa9.06□□□□□ -0.96
SMG1-204ENST00000561940 RPTNQ6XPR3 784 aa9.06□□□□□ -0.96
SMG1-204ENST00000561940 NPLOC4Q8TAT6 608 aa9.06□□□□□ -0.96
SMG1-204ENST00000561940 CDC6Q99741 560 aa9.06□□□□□ -0.96
SMG1-204ENST00000561940 MRPS23Q9Y3D9 190 aaKnown RBP9.06□□□□□ -0.96
SMG1-204ENST00000561940 KRTAP4-8A0A0G2JLE6 195 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 ZC3H12DA2A288 527 aaKnown RBP9.05□□□□□ -0.96
SMG1-204ENST00000561940 PRODHO43272 600 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 NPHS1O60500 1241 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 PEX10O60683 326 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 FUCA1P04066 466 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 DLG4P78352 724 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 TMC6Q7Z403 805 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 LZTR1Q8N653 840 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 TMEM145Q8NBT3 493 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 NLGN2Q8NFZ4 835 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 PPP1R16BQ96T49 567 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 IER2Q9BTL4 223 aa9.05□□□□□ -0.96
SMG1-204ENST00000561940 TRBV23OR9-2A0A075B6M9 112 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 TRBV23-1A0A0A0MS06 115 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 TEX51A0A1B0GUA7 166 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 F8W031 263 aaPredicted RBP9.04□□□□□ -0.96
SMG1-204ENST00000561940 DBHP09172 617 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 PABPC1P11940 636 aaKnown RBP9.04□□□□□ -0.96
SMG1-204ENST00000561940 YBX3P16989 372 aaKnown RBP eCLIP9.04□□□□□ -0.96
SMG1-204ENST00000561940 GFRA1P56159 465 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 YBX1P67809 324 aaKnown RBP9.04□□□□□ -0.96
SMG1-204ENST00000561940 TCEA2Q15560 299 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 FILIP1Q7Z7B0 1213 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 CCDC103Q8IW40 242 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 KREMEN2Q8NCW0 462 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 DPF3Q92784 378 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 OSBP2Q969R2 916 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 MMP19Q99542 508 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 DHRS4Q9BTZ2 278 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 GCM1Q9NP62 436 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 MARCH2Q9P0N8 246 aa9.04□□□□□ -0.96
SMG1-204ENST00000561940 DBR1Q9UK59 544 aaKnown RBP9.04□□□□□ -0.96
SMG1-204ENST00000561940 TCAF2A6NFQ2 919 aa9.03□□□□□ -0.96
SMG1-204ENST00000561940 FGFR1P11362 822 aa9.03□□□□□ -0.96
SMG1-204ENST00000561940 NCLP19338 710 aaKnown RBP9.03□□□□□ -0.96
SMG1-204ENST00000561940 NCKAP1LP55160 1127 aa9.03□□□□□ -0.96
SMG1-204ENST00000561940 CORO7P57737 925 aa9.03□□□□□ -0.96
SMG1-204ENST00000561940 DALRD3Q5D0E6 543 aaKnown RBP9.03□□□□□ -0.96
SMG1-204ENST00000561940 DENND5AQ6IQ26 1287 aa9.03□□□□□ -0.96
SMG1-204ENST00000561940 SLKQ9H2G2 1235 aaPredicted RBP9.03□□□□□ -0.96
SMG1-204ENST00000561940 NCOA5Q9HCD5 579 aaKnown RBP9.03□□□□□ -0.96
SMG1-204ENST00000561940 MBD1Q9UIS9 605 aaPredicted RBP9.03□□□□□ -0.96
SMG1-204ENST00000561940 SMG5Q9UPR3 1016 aaKnown RBP9.03□□□□□ -0.96
SMG1-204ENST00000561940 BLACEA4D250 179 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 NPIPB6E9PJ23 425 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 MEFVO15553 781 aaPredicted RBP9.02□□□□□ -0.97
SMG1-204ENST00000561940 RAPGEF3O95398 923 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 TSPAN15O95858 294 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 CPP00450 1065 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 LCP1P13796 627 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 EPHB3P54753 998 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 PAQR3Q6TCH7 311 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 NSMFQ6X4W1 530 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 ANKLE2Q86XL3 938 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 TEX2Q8IWB9 1127 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 PPIL6Q8IXY8 311 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 DIO2Q92813 273 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 CCDC140Q96MF4 163 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 MTA3Q9BTC8 594 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 CNTD2Q9H8S5 307 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 IFT57Q9NWB7 429 aa9.02□□□□□ -0.97
SMG1-204ENST00000561940 ABLIM1O14639 778 aa9.01□□□□□ -0.97
SMG1-204ENST00000561940 PPM1GO15355 546 aaPredicted RBP9.01□□□□□ -0.97
SMG1-204ENST00000561940 DLX3O60479 287 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms