RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 TYW1BQ6NUM6 668 aa15.79■□□□□ 0.12
PTCH1-213ENST00000546820 ARMCX2Q7L311 632 aa15.79■□□□□ 0.12
PTCH1-213ENST00000546820 HSCBQ8IWL3 235 aa15.79■□□□□ 0.12
PTCH1-213ENST00000546820 PURBQ96QR8 312 aaKnown RBP15.79■□□□□ 0.12
PTCH1-213ENST00000546820 ABHD16BQ9H3Z7 469 aa15.79■□□□□ 0.12
PTCH1-213ENST00000546820 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.79■□□□□ 0.12
PTCH1-213ENST00000546820 PLXNA1Q9UIW2 1896 aa15.78■□□□□ 0.12
PTCH1-213ENST00000546820 K7ELQ4 463 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-213ENST00000546820 IGHA2P01877 340 aa15.78■□□□□ 0.12
PTCH1-213ENST00000546820 PRKAR2AP13861 404 aaKnown RBP15.78■□□□□ 0.12
PTCH1-213ENST00000546820 FDPSP14324 419 aaKnown RBP15.78■□□□□ 0.12
PTCH1-213ENST00000546820 ST3GAL1Q11201 340 aa15.78■□□□□ 0.12
PTCH1-213ENST00000546820 STXBP2Q15833 593 aa15.78■□□□□ 0.12
PTCH1-213ENST00000546820 MORC4Q8TE76 937 aa15.78■□□□□ 0.12
PTCH1-213ENST00000546820 ZNF333Q96JL9 665 aa15.78■□□□□ 0.12
PTCH1-213ENST00000546820 FGD4Q96M96 766 aa15.78■□□□□ 0.12
PTCH1-213ENST00000546820 PXMP2Q9NR77 195 aa15.78■□□□□ 0.12
PTCH1-213ENST00000546820 COL20A1Q9P218 1284 aa15.78■□□□□ 0.12
PTCH1-213ENST00000546820 NR3C2P08235 984 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 EIF2AK2P19525 551 aaKnown RBP15.77■□□□□ 0.12
PTCH1-213ENST00000546820 CNGA1P29973 690 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 AP3B2Q13367 1082 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 ACVR2BQ13705 512 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 MAP3K21Q5TCX8 1036 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 XRRA1Q6P2D8 792 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 REXO1Q8N1G1 1221 aaKnown RBP15.77■□□□□ 0.12
PTCH1-213ENST00000546820 TMEM106CQ9BVX2 250 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 RNF208Q9H0X6 261 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 BRMS1Q9HCU9 246 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 VTA1Q9NP79 307 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 PCDHA6Q9UN73 950 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 SMC3Q9UQE7 1217 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 PCDHA8Q9Y5H6 950 aa15.77■□□□□ 0.12
PTCH1-213ENST00000546820 MSCO60682 206 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 EIF3JO75822 258 aaKnown RBP15.76■□□□□ 0.11
PTCH1-213ENST00000546820 SNAI1O95863 264 aaPredicted RBP15.76■□□□□ 0.11
PTCH1-213ENST00000546820 MYCLP12524 364 aaPredicted RBP15.76■□□□□ 0.11
PTCH1-213ENST00000546820 CCL5P13501 91 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 CCND2P30279 289 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 TRIM32Q13049 653 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 CUL4AQ13619 759 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 UBE2SQ16763 222 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 PRAMEF19Q5SWL8 479 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 VSIG10LQ86VR7 867 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 BLIDQ8IZY5 108 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 ABHD8Q96I13 439 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 C8orf76Q96K31 380 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 AIFM3Q96NN9 605 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 PDCD2LQ9BRP1 358 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 ZHX1Q9UKY1 873 aaPredicted RBP15.76■□□□□ 0.11
PTCH1-213ENST00000546820 FAM184BQ9ULE4 1060 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 PCDHA4Q9UN74 947 aa15.76■□□□□ 0.11
PTCH1-213ENST00000546820 ASTN1O14525 1302 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 DTNBO60941 627 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 STAM2O75886 525 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 MYCP01106 439 aaPredicted RBP15.75■□□□□ 0.11
PTCH1-213ENST00000546820 CYBAP13498 195 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 CAPN2P17655 700 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 EDNRBP24530 442 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 CLK2P49760 499 aaKnown RBP15.75■□□□□ 0.11
PTCH1-213ENST00000546820 PGM5Q15124 567 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 SAFBQ15424 915 aaKnown RBP eCLIP15.75■□□□□ 0.11
PTCH1-213ENST00000546820 JAKMIP3Q5VZ66 844 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 IQSEC1Q6DN90 963 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 INTS4Q96HW7 963 aaKnown RBP15.75■□□□□ 0.11
PTCH1-213ENST00000546820 PHF20Q9BVI0 1012 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 KCNJ14Q9UNX9 436 aa15.75■□□□□ 0.11
PTCH1-213ENST00000546820 SEPT4O43236 478 aa15.74■□□□□ 0.11
PTCH1-213ENST00000546820 HSP90AA1P07900 732 aaKnown RBP15.74■□□□□ 0.11
PTCH1-213ENST00000546820 PCNX4Q63HM2 1172 aa15.74■□□□□ 0.11
PTCH1-213ENST00000546820 EEPD1Q7L9B9 569 aa15.74■□□□□ 0.11
PTCH1-213ENST00000546820 DAGLBQ8NCG7 672 aa15.74■□□□□ 0.11
PTCH1-213ENST00000546820 ANO3Q9BYT9 981 aa15.74■□□□□ 0.11
PTCH1-213ENST00000546820 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.74■□□□□ 0.11
PTCH1-213ENST00000546820 UNC93B1Q9H1C4 597 aa15.74■□□□□ 0.11
PTCH1-213ENST00000546820 RBBP6Q7Z6E9 1792 aaKnown RBP15.74■□□□□ 0.11
PTCH1-213ENST00000546820 GJB1P08034 283 aa15.73■□□□□ 0.11
PTCH1-213ENST00000546820 ZNF865P0CJ78 1059 aaPredicted RBP15.73■□□□□ 0.11
PTCH1-213ENST00000546820 AKR1A1P14550 325 aa15.73■□□□□ 0.11
PTCH1-213ENST00000546820 GJB2P29033 226 aa15.73■□□□□ 0.11
PTCH1-213ENST00000546820 CCND3P30281 292 aaPredicted RBP15.73■□□□□ 0.11
PTCH1-213ENST00000546820 MTFR1Q15390 333 aa15.73■□□□□ 0.11
PTCH1-213ENST00000546820 KRT40Q6A162 431 aa15.73■□□□□ 0.11
PTCH1-213ENST00000546820 KCNV1Q6PIU1 500 aa15.73■□□□□ 0.11
PTCH1-213ENST00000546820 TMEM260Q9NX78 707 aa15.73■□□□□ 0.11
PTCH1-213ENST00000546820 FRMPD4Q14CM0 1322 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 CCDC85CA6NKD9 419 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 MMP1P03956 469 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 RARBP10826 455 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 KRT2P35908 639 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 ZNF76P36508 570 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 TNFAIP2Q03169 654 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 BECN1Q14457 450 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 CCDC144BQ3MJ40 725 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 GNPTABQ3T906 1256 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 KRT25Q7Z3Z0 450 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 NLRX1Q86UT6 975 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 FBXO16Q8IX29 292 aaPredicted RBP15.72■□□□□ 0.11
PTCH1-213ENST00000546820 TRPV1Q8NER1 839 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 FBXO18Q8NFZ0 1043 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms