RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ALADP13716 330 aa13.27□□□□□ -0.29
RTN3-204ENST00000354497 MCCP23508 829 aa13.27□□□□□ -0.29
RTN3-204ENST00000354497 WDR5P61964 334 aaKnown RBP13.27□□□□□ -0.29
RTN3-204ENST00000354497 AAMPQ13685 434 aa13.27□□□□□ -0.29
RTN3-204ENST00000354497 PTCRAQ6ISU1 281 aaPredicted RBP13.27□□□□□ -0.29
RTN3-204ENST00000354497 FAM117BQ6P1L5 589 aa13.27□□□□□ -0.29
RTN3-204ENST00000354497 CCDC155Q8N6L0 562 aa13.27□□□□□ -0.29
RTN3-204ENST00000354497 LMCD1Q9NZU5 365 aa13.27□□□□□ -0.29
RTN3-204ENST00000354497 RAD50Q92878 1312 aa13.27□□□□□ -0.29
RTN3-204ENST00000354497 TRANK1O15050 2925 aa13.26□□□□□ -0.29
RTN3-204ENST00000354497 GABBR2O75899 941 aa13.26□□□□□ -0.29
RTN3-204ENST00000354497 DEFB103AP81534 67 aa13.26□□□□□ -0.29
RTN3-204ENST00000354497 NHLH1Q02575 133 aa13.26□□□□□ -0.29
RTN3-204ENST00000354497 LEXMQ3ZCV2 418 aa13.26□□□□□ -0.29
RTN3-204ENST00000354497 EP400NLQ6ZTU2 488 aa13.26□□□□□ -0.29
RTN3-204ENST00000354497 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.26□□□□□ -0.29
RTN3-204ENST00000354497 PANK1Q8TE04 598 aa13.26□□□□□ -0.29
RTN3-204ENST00000354497 TGS1Q96RS0 853 aaKnown RBP13.26□□□□□ -0.29
RTN3-204ENST00000354497 ADD3Q9UEY8 706 aaKnown RBP13.26□□□□□ -0.29
RTN3-204ENST00000354497 SYNPO2Q9UMS6 1093 aa13.26□□□□□ -0.29
RTN3-204ENST00000354497 TANC1Q9C0D5 1861 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 PTPDC1A2A3K4 754 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 RAB11FIP3O75154 756 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 HMMRO75330 724 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 ALDH5A1P51649 535 aaPredicted RBP13.25□□□□□ -0.29
RTN3-204ENST00000354497 BAATQ14032 418 aaPredicted RBP13.25□□□□□ -0.29
RTN3-204ENST00000354497 PPP2R5BQ15173 497 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 PTGISQ16647 500 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 CCDC96Q2M329 555 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 NFRKBQ6P4R8 1299 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 GIMAP6Q6P9H5 292 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 FBXL18Q96ME1 805 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 SUGCTQ9HAC7 445 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 EPB41L4AQ9HCS5 686 aaPredicted RBP13.25□□□□□ -0.29
RTN3-204ENST00000354497 PRR12Q9ULL5 1215 aa13.25□□□□□ -0.29
RTN3-204ENST00000354497 CALML3P27482 149 aa13.24□□□□□ -0.29
RTN3-204ENST00000354497 TFAP4Q01664 338 aa13.24□□□□□ -0.29
RTN3-204ENST00000354497 PTPN11Q06124 597 aaPredicted RBP13.24□□□□□ -0.29
RTN3-204ENST00000354497 PDE4DQ08499 809 aa13.24□□□□□ -0.29
RTN3-204ENST00000354497 NEDD1Q8NHV4 660 aa13.24□□□□□ -0.29
RTN3-204ENST00000354497 COPS5Q92905 334 aa13.24□□□□□ -0.29
RTN3-204ENST00000354497 GMCL1Q96IK5 515 aa13.24□□□□□ -0.29
RTN3-204ENST00000354497 SNX27Q96L92 541 aa13.24□□□□□ -0.29
RTN3-204ENST00000354497 STX8Q9UNK0 236 aa13.24□□□□□ -0.29
RTN3-204ENST00000354497 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.23□□□□□ -0.29
RTN3-204ENST00000354497 LINC01553A4QN01 128 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 H3BQ06 376 aaPredicted RBP13.23□□□□□ -0.29
RTN3-204ENST00000354497 CCER2I3L3R5 266 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 GPAA1O43292 621 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 DCXO43602 365 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 KPNA6O60684 536 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 ERVK-21P61565 698 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 PDE4BQ07343 736 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 GSE1Q14687 1217 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 LRRFIP1Q32MZ4 808 aaKnown RBP13.23□□□□□ -0.29
RTN3-204ENST00000354497 CNKSR3Q6P9H4 555 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 LRRC8DQ7L1W4 858 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 RASGRP2Q7LDG7 609 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 FBXO22Q8NEZ5 403 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 MORC4Q8TE76 937 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 AFAP1L1Q8TED9 768 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 OSBP2Q969R2 916 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 RAD9AQ99638 391 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 MYH7P12883 1935 aa13.23□□□□□ -0.29
RTN3-204ENST00000354497 RBAK-RBAKDNI3L0D1 243 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 NFIBO00712 420 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 GJB5O95377 273 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 ICAM1P05362 532 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 SLC3A2P08195 630 aaKnown RBP13.22□□□□□ -0.29
RTN3-204ENST00000354497 SELPP16109 830 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 CLCN6P51797 869 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 RCSD1Q6JBY9 416 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 SLC30A10Q6XR72 485 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 CAGE1Q8TC20 777 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 APPBP2Q92624 585 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 MPHOSPH6Q99547 160 aaKnown RBP13.22□□□□□ -0.29
RTN3-204ENST00000354497 C17orf80Q9BSJ5 609 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 MUC6Q6W4X9 2439 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 PLIN4Q96Q06 1357 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 RBM47A0AV96 593 aaKnown RBP13.22□□□□□ -0.29
RTN3-204ENST00000354497 GRXCR2A6NFK2 248 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 M0R2C6 588 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 NKRFO15226 690 aaKnown RBP eCLIP13.22□□□□□ -0.29
RTN3-204ENST00000354497 TXNP10599 105 aaKnown RBP13.22□□□□□ -0.29
RTN3-204ENST00000354497 GNAT2P19087 354 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 PUS10Q3MIT2 529 aaKnown RBP13.22□□□□□ -0.29
RTN3-204ENST00000354497 NACAP1Q9BZK3 213 aa13.22□□□□□ -0.29
RTN3-204ENST00000354497 PTPRSQ13332 1948 aa13.21□□□□□ -0.29
RTN3-204ENST00000354497 A6NJR5 290 aa13.21□□□□□ -0.3
RTN3-204ENST00000354497 TSPY2A6NKD2 308 aa13.21□□□□□ -0.3
RTN3-204ENST00000354497 RNF113AO15541 343 aaKnown RBP13.21□□□□□ -0.3
RTN3-204ENST00000354497 SMARCA5O60264 1052 aaPredicted RBP13.21□□□□□ -0.3
RTN3-204ENST00000354497 SLC16A2P36021 539 aa13.21□□□□□ -0.3
RTN3-204ENST00000354497 IKBKEQ14164 716 aa13.21□□□□□ -0.3
RTN3-204ENST00000354497 PTPROQ16827 1216 aa13.21□□□□□ -0.3
RTN3-204ENST00000354497 TCTN1Q2MV58 587 aa13.21□□□□□ -0.3
RTN3-204ENST00000354497 GDF6Q6KF10 455 aaPredicted RBP13.21□□□□□ -0.3
RTN3-204ENST00000354497 IFNL3Q8IZI9 196 aa13.21□□□□□ -0.3
RTN3-204ENST00000354497 SCFD2Q8WU76 684 aa13.21□□□□□ -0.3
RTN3-204ENST00000354497 LCTP09848 1927 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms