RNA–Protein interactions for RNA: YPL006W

NCR1, Transcript of Vacuolar membrane protein, yeast

Gene NCR1, Length 3,513 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCR1	YPL006W	OPY1	P38271	328 aa		5.05	□□□□□ -1.6
NCR1	YPL006W	IME2	P32581	645 aa		5.04	□□□□□ -1.6
NCR1	YPL006W	CHZ1	P40019	153 aa	Predicted RBP	5.04	□□□□□ -1.6
NCR1	YPL006W	YDL144C	Q07589	356 aa		5.04	□□□□□ -1.6
NCR1	YPL006W	RPC31	P17890	251 aa		5.03	□□□□□ -1.6
NCR1	YPL006W	SUI2	P20459	304 aa	Known RBP	5.03	□□□□□ -1.6
NCR1	YPL006W	SNF2	P22082	1703 aa		5.02	□□□□□ -1.61
NCR1	YPL006W	YRB30	P53107	440 aa	Predicted RBP	5.02	□□□□□ -1.61
NCR1	YPL006W	RRP46	P53256	223 aa	Predicted RBP	5.02	□□□□□ -1.61
NCR1	YPL006W	BNI1	P41832	1953 aa		5.01	□□□□□ -1.61
NCR1	YPL006W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	5	□□□□□ -1.61	not detected
NCR1	YPL006W	HAP1	P0CE41	1502 aa		5	□□□□□ -1.61
NCR1	YPL006W	MPP10	P47083	593 aa	Known RBP	5	□□□□□ -1.61
NCR1	YPL006W	CAB1	Q04430	367 aa		5	□□□□□ -1.61
NCR1	YPL006W	ABP1	P15891	592 aa	Known RBP	5	□□□□□ -1.61
NCR1	YPL006W	YIR014W	P40570	242 aa		4.99	□□□□□ -1.61
NCR1	YPL006W	URN1	Q06525	465 aa	Known RBP	4.98	□□□□□ -1.61
NCR1	YPL006W	FPR3	P38911	411 aa	Known RBP	4.97	□□□□□ -1.61
NCR1	YPL006W	ITT1	Q04638	464 aa		4.97	□□□□□ -1.61
NCR1	YPL006W	YPR148C	Q06523	435 aa		4.97	□□□□□ -1.61
NCR1	YPL006W	DNF3	Q12674	1656 aa		4.97	□□□□□ -1.61
NCR1	YPL006W	SAP155	P43612	1002 aa		4.97	□□□□□ -1.61
NCR1	YPL006W	YFR016C	P43597	1233 aa	Known RBP	4.96	□□□□□ -1.62
NCR1	YPL006W	KRE5	P22023	1365 aa		4.96	□□□□□ -1.62
NCR1	YPL006W	RTR1	P40084	226 aa	Predicted RBP	4.95	□□□□□ -1.62
NCR1	YPL006W	THI22	Q06490	572 aa		4.95	□□□□□ -1.62
NCR1	YPL006W	PSK1	P31374	1356 aa		4.95	□□□□□ -1.62
NCR1	YPL006W	HEF3	P53978	1044 aa	Known RBP	4.95	□□□□□ -1.62
NCR1	YPL006W	CLC1	P17891	233 aa		4.94	□□□□□ -1.62
NCR1	YPL006W	PRD1	P25375	712 aa		4.94	□□□□□ -1.62
NCR1	YPL006W	PPH3	P32345	308 aa		4.94	□□□□□ -1.62
NCR1	YPL006W	YIL092W	P40497	633 aa		4.94	□□□□□ -1.62
NCR1	YPL006W	AUS1	Q08409	1394 aa		4.94	□□□□□ -1.62
NCR1	YPL006W	TAP42	Q04372	366 aa		4.94	□□□□□ -1.62
NCR1	YPL006W	NAP1	P25293	417 aa	Known RBP	4.93	□□□□□ -1.62
NCR1	YPL006W	RCM1	P53972	490 aa		4.93	□□□□□ -1.62
NCR1	YPL006W	HIM1	Q06674	414 aa		4.93	□□□□□ -1.62
NCR1	YPL006W	TPD3	P31383	635 aa		4.92	□□□□□ -1.62
NCR1	YPL006W	RAD2	P07276	1031 aa		4.92	□□□□□ -1.62
NCR1	YPL006W	SIR4	P11978	1358 aa		4.92	□□□□□ -1.62
NCR1	YPL006W	POL32	P47110	350 aa		4.92	□□□□□ -1.62
NCR1	YPL006W	KAR2	P16474	682 aa	Known RBP	4.91	□□□□□ -1.62
NCR1	YPL006W	DAL5	P15365	543 aa		4.91	□□□□□ -1.62
NCR1	YPL006W	RTT109	Q07794	436 aa		4.91	□□□□□ -1.62
NCR1	YPL006W	SNF7	P39929	240 aa	Known RBP	4.9	□□□□□ -1.62
NCR1	YPL006W	YRF1-4	O13559	1382 aa		4.9	□□□□□ -1.63
NCR1	YPL006W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.63	not detected
NCR1	YPL006W	PDI1	P17967	522 aa	Known RBP	4.89	□□□□□ -1.63
NCR1	YPL006W	PCT1	P13259	424 aa		4.89	□□□□□ -1.63
NCR1	YPL006W	CSE4	P36012	229 aa		4.89	□□□□□ -1.63
NCR1	YPL006W	EAF7	P53911	425 aa	Known RBP	4.89	□□□□□ -1.63
NCR1	YPL006W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.89	□□□□□ -1.63
NCR1	YPL006W	LEU2	P04173	364 aa	Predicted RBP	4.89	□□□□□ -1.63
NCR1	YPL006W	CPS1	P27614	576 aa		4.89	□□□□□ -1.63
NCR1	YPL006W	ROX1	P25042	368 aa		4.88	□□□□□ -1.63
NCR1	YPL006W	GRX4	P32642	244 aa		4.88	□□□□□ -1.63
NCR1	YPL006W	MRX12	P47084	519 aa		4.88	□□□□□ -1.63
NCR1	YPL006W	USO1	P25386	1790 aa		4.88	□□□□□ -1.63
NCR1	YPL006W	RIA1	P53893	1110 aa		4.88	□□□□□ -1.63
NCR1	YPL006W	APC1	P53886	1748 aa		4.87	□□□□□ -1.63
NCR1	YPL006W	MTR4	P47047	1073 aa	Known RBP	4.87	□□□□□ -1.63
NCR1	YPL006W	PAP2	P53632	584 aa	Known RBP	4.87	□□□□□ -1.63
NCR1	YPL006W	RPO41	P13433	1351 aa	Known RBP	4.86	□□□□□ -1.63
NCR1	YPL006W	PRP43	P53131	767 aa	Known RBP	4.86	□□□□□ -1.63
NCR1	YPL006W	PUF6	Q04373	656 aa	Known RBP	4.86	□□□□□ -1.63
NCR1	YPL006W	MAK21	Q12176	1025 aa	Known RBP	4.85	□□□□□ -1.63
NCR1	YPL006W	ADE6	P38972	1358 aa	Known RBP	4.85	□□□□□ -1.63
NCR1	YPL006W	RTF1	P53064	558 aa		4.85	□□□□□ -1.63
NCR1	YPL006W	CAB3	P36076	571 aa		4.84	□□□□□ -1.63
NCR1	YPL006W	ILV3	P39522	585 aa	Known RBP	4.84	□□□□□ -1.63
NCR1	YPL006W	DJP1	P40564	432 aa		4.84	□□□□□ -1.63
NCR1	YPL006W	YNR029C	P53729	429 aa	Known RBP	4.84	□□□□□ -1.63
NCR1	YPL006W	TRP5	P00931	707 aa	Known RBP	4.83	□□□□□ -1.64
NCR1	YPL006W	SLN1	P39928	1220 aa	Predicted RBP	4.83	□□□□□ -1.64
NCR1	YPL006W	RPS24A	P0CX31	135 aa	Known RBP	4.83	□□□□□ -1.64
NCR1	YPL006W	RPS24B	P0CX32	135 aa	Known RBP	4.83	□□□□□ -1.64
NCR1	YPL006W	DSD1	P53095	428 aa		4.83	□□□□□ -1.64
NCR1	YPL006W	VPS24	P36095	224 aa	Known RBP	4.83	□□□□□ -1.64
NCR1	YPL006W	AKL1	P38080	1108 aa	Known RBP	4.83	□□□□□ -1.64
NCR1	YPL006W	GAS4	Q08271	471 aa		4.83	□□□□□ -1.64
NCR1	YPL006W	LSP1	Q12230	341 aa	Known RBP	4.83	□□□□□ -1.64
NCR1	YPL006W	YIL177C	P40434	1758 aa		4.82	□□□□□ -1.64
NCR1	YPL006W	YJL225C	P40889	1758 aa		4.82	□□□□□ -1.64
NCR1	YPL006W	MSP1	P28737	362 aa		4.82	□□□□□ -1.64
NCR1	YPL006W	EBP2	P36049	427 aa	Known RBP	4.82	□□□□□ -1.64
NCR1	YPL006W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
NCR1	YPL006W	YNL050C	P53952	270 aa		4.81	□□□□□ -1.64
NCR1	YPL006W	RRP5	Q05022	1729 aa	Known RBP	4.81	□□□□□ -1.64
NCR1	YPL006W	GYP7	P48365	746 aa		4.81	□□□□□ -1.64
NCR1	YPL006W	MAK10	Q02197	733 aa		4.81	□□□□□ -1.64
NCR1	YPL006W	YRF1-2	P40105	1681 aa		4.81	□□□□□ -1.64
NCR1	YPL006W	SRT1	Q03175	343 aa		4.81	□□□□□ -1.64
NCR1	YPL006W	RLF2	Q12495	606 aa		4.81	□□□□□ -1.64
NCR1	YPL006W	EDE1	P34216	1381 aa		4.81	□□□□□ -1.64
NCR1	YPL006W	DPS1	P04802	557 aa	Known RBP	4.8	□□□□□ -1.64
NCR1	YPL006W	KNS1	P32350	737 aa	Predicted RBP	4.8	□□□□□ -1.64
NCR1	YPL006W	NTH2	P35172	780 aa		4.8	□□□□□ -1.64
NCR1	YPL006W	TY4B-H	P0C2J7	1802 aa		4.8	□□□□□ -1.64
NCR1	YPL006W	TY4B-J	P47024	1803 aa		4.8	□□□□□ -1.64
NCR1	YPL006W	RRT14	P40470	206 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms