RNA–Protein interactions for RNA: YOR157C

PUP1, Transcript of Beta 2 subunit of the 20S proteasome, yeastyeast

Gene PUP1, Length 786 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PUP1YOR157C UGA2P38067 497 aa12.78□□□□□ -0.36
PUP1YOR157C URB1P34241 1764 aaKnown RBP12.78□□□□□ -0.36
PUP1YOR157C TAF5P38129 798 aa12.77□□□□□ -0.37
PUP1YOR157C LYS4P49367 693 aaPredicted RBP12.76□□□□□ -0.37
PUP1YOR157C DOT5P40553 215 aa12.75□□□□□ -0.37
PUP1YOR157C TY4B-HP0C2J7 1802 aa12.74□□□□□ -0.37
PUP1YOR157C TY4B-JP47024 1803 aa12.74□□□□□ -0.37
PUP1YOR157C RAV1P47104 1357 aa12.72□□□□□ -0.37
PUP1YOR157C GTT3P39996 337 aa12.72□□□□□ -0.37
PUP1YOR157C NPR2P39923 615 aa12.71□□□□□ -0.37
PUP1YOR157C SSM4P40318 1319 aa12.7□□□□□ -0.38
PUP1YOR157C SSA2P10592 639 aaKnown RBP12.7□□□□□ -0.38
PUP1YOR157C PRP5P21372 849 aaPredicted RBP12.69□□□□□ -0.38
PUP1YOR157C FKS3Q04952 1785 aa12.68□□□□□ -0.38
PUP1YOR157C ALD2P47771 506 aa12.67□□□□□ -0.38
PUP1YOR157C PSK1P31374 1356 aa12.67□□□□□ -0.38
PUP1YOR157C IKI3Q06706 1349 aaKnown RBP12.66□□□□□ -0.38
PUP1YOR157C CPS1P27614 576 aa12.66□□□□□ -0.38
PUP1YOR157C FOX2Q02207 900 aaKnown RBP12.66□□□□□ -0.38
PUP1YOR157C MSB3P48566 633 aaPredicted RBP12.65□□□□□ -0.38
PUP1YOR157C IES2P40154 320 aa12.64□□□□□ -0.39
PUP1YOR157C CTH1P47976 325 aa12.64□□□□□ -0.39
PUP1YOR157C YJL181WP46987 611 aa12.63□□□□□ -0.39
PUP1YOR157C PAF1P38351 445 aa12.61□□□□□ -0.39
PUP1YOR157C RCM1P53972 490 aa12.61□□□□□ -0.39
PUP1YOR157C EDE1P34216 1381 aa12.6□□□□□ -0.39
PUP1YOR157C RTC1Q08281 1341 aa12.6□□□□□ -0.39
PUP1YOR157C ROM2P51862 1356 aaKnown RBP12.57□□□□□ -0.4
PUP1YOR157C BFR2Q06631 534 aaKnown RBP12.55□□□□□ -0.4
PUP1YOR157C PPH3P32345 308 aa12.54□□□□□ -0.4
PUP1YOR157C YRF1-3P0CX14 1859 aa12.54□□□□□ -0.4
PUP1YOR157C YRF1-7P0CX15 1859 aa12.54□□□□□ -0.4
PUP1YOR157C YRF1-6P53819 1859 aa12.54□□□□□ -0.4
PUP1YOR157C PRP40P33203 583 aaKnown RBP12.52□□□□□ -0.41
PUP1YOR157C TAF8Q03750 510 aa12.51□□□□□ -0.41
PUP1YOR157C LAM6Q08001 693 aa12.51□□□□□ -0.41
PUP1YOR157C TCB1Q12466 1186 aa12.51□□□□□ -0.41
PUP1YOR157C RSF2P46974 1380 aa12.51□□□□□ -0.41
PUP1YOR157C NAP1P25293 417 aaKnown RBP12.5□□□□□ -0.41
PUP1YOR157C ADE6P38972 1358 aaKnown RBP12.47□□□□□ -0.41
PUP1YOR157C COBP00163 385 aa12.47□□□□□ -0.41
PUP1YOR157C RPG1P38249 964 aaKnown RBP12.47□□□□□ -0.41
PUP1YOR157C YEF3P16521 1044 aaKnown RBP12.46□□□□□ -0.41
PUP1YOR157C YKR075CP36155 307 aa12.45□□□□□ -0.42
PUP1YOR157C YKL133CP36066 463 aa12.43□□□□□ -0.42
PUP1YOR157C SLM3Q12093 417 aa12.43□□□□□ -0.42
PUP1YOR157C YRF1-4O13559 1382 aa12.4□□□□□ -0.42
PUP1YOR157C SNF2P22082 1703 aa12.37□□□□□ -0.43
PUP1YOR157C EAF6P47128 113 aa12.36□□□□□ -0.43
PUP1YOR157C ENP1P38333 483 aaKnown RBP12.35□□□□□ -0.43
PUP1YOR157C YIL177CP40434 1758 aa12.34□□□□□ -0.43
PUP1YOR157C YJL225CP40889 1758 aa12.34□□□□□ -0.43
PUP1YOR157C XKS1P42826 600 aa12.33□□□□□ -0.44
PUP1YOR157C NOP7P53261 605 aaKnown RBP12.32□□□□□ -0.44
PUP1YOR157C ALD3P54114 506 aa12.32□□□□□ -0.44
PUP1YOR157C BDF1P35817 686 aa12.31□□□□□ -0.44
PUP1YOR157C ESL2P36168 1195 aa12.31□□□□□ -0.44
PUP1YOR157C APC1P53886 1748 aa12.31□□□□□ -0.44
PUP1YOR157C CSE4P36012 229 aa12.3□□□□□ -0.44
PUP1YOR157C RPS24AP0CX31 135 aaKnown RBP12.28□□□□□ -0.44
PUP1YOR157C RPS24BP0CX32 135 aaKnown RBP12.28□□□□□ -0.44
PUP1YOR157C SPT7P35177 1332 aa12.28□□□□□ -0.44
PUP1YOR157C SSA4P22202 642 aaKnown RBP12.27□□□□□ -0.45
PUP1YOR157C FRK1Q03002 865 aaPredicted RBP12.25□□□□□ -0.45
PUP1YOR157C PRP43P53131 767 aaKnown RBP12.23□□□□□ -0.45
PUP1YOR157C SAP155P43612 1002 aa12.2□□□□□ -0.46
PUP1YOR157C SQS1P53866 767 aaKnown RBP12.2□□□□□ -0.46
PUP1YOR157C TOM1Q03280 3268 aa12.19□□□□□ -0.46
PUP1YOR157C LEU2P04173 364 aaPredicted RBP12.19□□□□□ -0.46
PUP1YOR157C MSB4Q12317 492 aa12.19□□□□□ -0.46
PUP1YOR157C MTR4P47047 1073 aaKnown RBP12.18□□□□□ -0.46
PUP1YOR157C MSN5P52918 1224 aa12.18□□□□□ -0.46
PUP1YOR157C RIM15P43565 1770 aa12.18□□□□□ -0.46
PUP1YOR157C YLR419WQ06698 1435 aaKnown RBP12.17□□□□□ -0.46
PUP1YOR157C TOS1P38288 455 aa12.16□□□□□ -0.46
PUP1YOR157C PEX21P50091 288 aa12.16□□□□□ -0.46
PUP1YOR157C SPE2P21182 396 aa12.15□□□□□ -0.46
PUP1YOR157C ADE16P54113 591 aaKnown RBP12.15□□□□□ -0.46
PUP1YOR157C PUS5Q06244 254 aa12.15□□□□□ -0.46
PUP1YOR157C BUG1Q12191 341 aa12.15□□□□□ -0.46
PUP1YOR157C CHZ1P40019 153 aaPredicted RBP12.14□□□□□ -0.47
PUP1YOR157C YER156CP40093 338 aaKnown RBP12.14□□□□□ -0.47
PUP1YOR157C CTT1P06115 562 aa12.13□□□□□ -0.47
PUP1YOR157C MEC3Q02574 474 aa12.12□□□□□ -0.47
PUP1YOR157C HPC2Q01448 625 aa12.11□□□□□ -0.47
PUP1YOR157C KIN4Q01919 800 aa12.11□□□□□ -0.47
PUP1YOR157C MHP1P43638 1398 aa12.1□□□□□ -0.47
PUP1YOR157C RPO41P13433 1351 aaKnown RBP12.09□□□□□ -0.47
PUP1YOR157C RCR1P38212 213 aa12.09□□□□□ -0.47
PUP1YOR157C GRE2Q12068 342 aaKnown RBP12.09□□□□□ -0.47
PUP1YOR157C KIP3P53086 805 aaKnown RBP12.08□□□□□ -0.48
PUP1YOR157C CWH41P53008 833 aa12.06□□□□□ -0.48
PUP1YOR157C UTP22P53254 1237 aaPredicted RBP12.06□□□□□ -0.48
PUP1YOR157C RIX7Q07844 837 aaKnown RBP12.05□□□□□ -0.48
PUP1YOR157C RAD4P14736 754 aa12.04□□□□□ -0.48
PUP1YOR157C SIR4P11978 1358 aa12.04□□□□□ -0.48
PUP1YOR157C YKL222CP35995 705 aa12.03□□□□□ -0.48
PUP1YOR157C ATG13Q06628 738 aa12.03□□□□□ -0.48
PUP1YOR157C DPS1P04802 557 aaKnown RBP12.02□□□□□ -0.49
PUP1YOR157C ERT1P38140 529 aa12.02□□□□□ -0.49
Retrieved 100 of 5,963 RNA–protein pairs in 16.9 ms