RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C YLR346CQ06139 101 aa2.13□□□□□ -2.07
NIP1YMR309C MET32Q12041 191 aa2.13□□□□□ -2.07
NIP1YMR309C RAM2P29703 316 aa2.12□□□□□ -2.07
NIP1YMR309C PHM7Q12252 991 aa2.12□□□□□ -2.07
NIP1YMR309C NUD1P32336 851 aa2.12□□□□□ -2.07
NIP1YMR309C NOP53Q12080 455 aaKnown RBP2.11□□□□□ -2.07
NIP1YMR309C SBP1P10080 294 aaKnown RBP2.11□□□□□ -2.07
NIP1YMR309C RRN7P40992 514 aa2.11□□□□□ -2.07
NIP1YMR309C YIR007WP40566 764 aa2.09□□□□□ -2.08
NIP1YMR309C OPT2Q06593 877 aa2.09□□□□□ -2.08
NIP1YMR309C SRF1Q12516 437 aa2.09□□□□□ -2.08
NIP1YMR309C RAD54P32863 898 aa2.08□□□□□ -2.08
NIP1YMR309C SCW11P53189 542 aa2.07□□□□□ -2.08
NIP1YMR309C TUM1Q08686 304 aaKnown RBP2.07□□□□□ -2.08
NIP1YMR309C TY1A-DR4O74302 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-HP0C2I4 478 aaKnown RBP2.06□□□□□ -2.08
NIP1YMR309C TY1A-AP0CX57 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-PR1P0CX58 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-ORP0CX59 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-PR2P0CX60 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-DR5P0CX65 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-ER2P0CX66 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-GR3P0CX67 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-LR1P0CX68 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-MR2P0CX69 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-JR2P47099 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-DR1Q03856 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-ML1Q04706 440 aaKnown RBP2.06□□□□□ -2.08
NIP1YMR309C TY1A-BRQ12217 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-NL2Q12470 440 aa2.06□□□□□ -2.08
NIP1YMR309C TY1A-GR2Q12485 440 aa2.06□□□□□ -2.08
NIP1YMR309C SEC2P17065 759 aa2.06□□□□□ -2.08
NIP1YMR309C MDJ1P35191 511 aa2.05□□□□□ -2.08
NIP1YMR309C GLY1P37303 387 aaKnown RBP2.05□□□□□ -2.08
NIP1YMR309C PCS60P38137 543 aaKnown RBP RIP-Chip data2.05□□□□□ -2.08not detected
NIP1YMR309C VHR2P40041 505 aa2.05□□□□□ -2.08
NIP1YMR309C NSG2P53898 299 aa2.05□□□□□ -2.08
NIP1YMR309C YLR326WQ06170 240 aaKnown RBP2.05□□□□□ -2.08
NIP1YMR309C PUS5Q06244 254 aa2.05□□□□□ -2.08
NIP1YMR309C TFB4Q12004 338 aa2.05□□□□□ -2.08
NIP1YMR309C UGA3P26370 528 aa2.04□□□□□ -2.08
NIP1YMR309C TYW1Q08960 810 aaKnown RBP2.04□□□□□ -2.08
NIP1YMR309C DPH6Q12429 685 aa2.04□□□□□ -2.08
NIP1YMR309C CCT8P47079 568 aaKnown RBP2.03□□□□□ -2.08
NIP1YMR309C MSB3P48566 633 aaPredicted RBP2.03□□□□□ -2.08
NIP1YMR309C MIP1P15801 1254 aa2.03□□□□□ -2.08
NIP1YMR309C PTK2P47116 818 aaKnown RBP2.02□□□□□ -2.09
NIP1YMR309C CSC1Q06538 782 aa2.02□□□□□ -2.09
NIP1YMR309C UBP14P38237 781 aaKnown RBP2.01□□□□□ -2.09
NIP1YMR309C KIC1P38692 1080 aa2.01□□□□□ -2.09
NIP1YMR309C TY1A-BLQ12266 440 aa2□□□□□ -2.09
NIP1YMR309C NUP85P46673 744 aa2□□□□□ -2.09
NIP1YMR309C THI72Q08579 599 aa2□□□□□ -2.09
NIP1YMR309C IFH1P39520 1085 aa1.98□□□□□ -2.09
NIP1YMR309C LYS5P50113 272 aa1.98□□□□□ -2.09
NIP1YMR309C UBP2Q01476 1272 aa1.97□□□□□ -2.09
NIP1YMR309C YPR053CQ6Q5F3 151 aa1.97□□□□□ -2.09
NIP1YMR309C AI1P03875 834 aa1.97□□□□□ -2.09
NIP1YMR309C MOD5P07884 428 aa1.97□□□□□ -2.09
NIP1YMR309C GAP1P19145 602 aaPredicted RBP1.96□□□□□ -2.1
NIP1YMR309C PAC1P39946 494 aaKnown RBP1.96□□□□□ -2.1
NIP1YMR309C SYH1Q02875 849 aaKnown RBP1.96□□□□□ -2.1
NIP1YMR309C LSC2P53312 427 aa1.95□□□□□ -2.1
NIP1YMR309C KEX2P13134 814 aa1.95□□□□□ -2.1
NIP1YMR309C IRC24P40580 263 aa1.95□□□□□ -2.1
NIP1YMR309C ROG3P43602 733 aa1.95□□□□□ -2.1
NIP1YMR309C MAC1P35192 417 aa1.93□□□□□ -2.1
NIP1YMR309C JJJ3P47138 172 aa1.93□□□□□ -2.1
NIP1YMR309C TY1A-MR1Q04215 440 aa1.93□□□□□ -2.1
NIP1YMR309C SET1P38827 1080 aaKnown RBP1.92□□□□□ -2.1
NIP1YMR309C ERF2Q06551 359 aa1.92□□□□□ -2.1
NIP1YMR309C KXD1P53158 218 aa1.91□□□□□ -2.1
NIP1YMR309C YPR109WQ06104 294 aa1.91□□□□□ -2.1
NIP1YMR309C ARG82P07250 355 aa1.91□□□□□ -2.1
NIP1YMR309C YFL066CP43538 392 aa1.91□□□□□ -2.1
NIP1YMR309C YMR187CQ03236 431 aa1.91□□□□□ -2.1
NIP1YMR309C KIP2P28743 706 aa1.9□□□□□ -2.1
NIP1YMR309C RTT106P40161 455 aa1.9□□□□□ -2.1
NIP1YMR309C YDR090CQ03193 310 aa1.9□□□□□ -2.1
NIP1YMR309C OSH7P38755 437 aa1.89□□□□□ -2.11
NIP1YMR309C TUB4P53378 473 aa1.89□□□□□ -2.11
NIP1YMR309C TCB1Q12466 1186 aa1.89□□□□□ -2.11
NIP1YMR309C SKN7P38889 622 aa1.89□□□□□ -2.11
NIP1YMR309C YPL034WQ03083 165 aa1.89□□□□□ -2.11
NIP1YMR309C CCP1P00431 361 aa1.88□□□□□ -2.11
NIP1YMR309C MVP1P40959 511 aaKnown RBP1.88□□□□□ -2.11
NIP1YMR309C DLD1P32891 587 aa1.87□□□□□ -2.11
NIP1YMR309C ORC6P38826 435 aa1.87□□□□□ -2.11
NIP1YMR309C YJR098CP47139 656 aa1.87□□□□□ -2.11
NIP1YMR309C GLT1Q12680 2145 aaKnown RBP1.87□□□□□ -2.11
NIP1YMR309C AAD14P42884 376 aa1.87□□□□□ -2.11
NIP1YMR309C TDA6Q06466 467 aa1.87□□□□□ -2.11
NIP1YMR309C IXR1P33417 597 aa1.86□□□□□ -2.11
NIP1YMR309C REF2P42073 533 aaPredicted RBP1.86□□□□□ -2.11
NIP1YMR309C YPR148CQ06523 435 aa1.86□□□□□ -2.11
NIP1YMR309C HXT10P43581 546 aa1.86□□□□□ -2.11
NIP1YMR309C AGE1Q04412 482 aa1.86□□□□□ -2.11
NIP1YMR309C TPD3P31383 635 aa1.85□□□□□ -2.11
NIP1YMR309C MAK21Q12176 1025 aaKnown RBP1.85□□□□□ -2.11
NIP1YMR309C COX6P00427 148 aa1.84□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms