RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeastyeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USA1YML029W TAF8Q03750 510 aa5.28□□□□□ -1.56
USA1YML029W YLR419WQ06698 1435 aaKnown RBP5.27□□□□□ -1.57
USA1YML029W SPE2P21182 396 aa5.27□□□□□ -1.57
USA1YML029W CPS1P27614 576 aa5.26□□□□□ -1.57
USA1YML029W PRP43P53131 767 aaKnown RBP5.26□□□□□ -1.57
USA1YML029W POL5P39985 1022 aaKnown RBP5.25□□□□□ -1.57
USA1YML029W ADE6P38972 1358 aaKnown RBP5.24□□□□□ -1.57
USA1YML029W KIP3P53086 805 aaKnown RBP5.24□□□□□ -1.57
USA1YML029W MHP1P43638 1398 aa5.24□□□□□ -1.57
USA1YML029W EDE1P34216 1381 aa5.23□□□□□ -1.57
USA1YML029W MTR4P47047 1073 aaKnown RBP5.23□□□□□ -1.57
USA1YML029W RRP5Q05022 1729 aaKnown RBP5.22□□□□□ -1.57
USA1YML029W LEU2P04173 364 aaPredicted RBP5.21□□□□□ -1.58
USA1YML029W IOC4Q04213 475 aa5.21□□□□□ -1.58
USA1YML029W YRF1-2P40105 1681 aa5.2□□□□□ -1.58
USA1YML029W CHZ1P40019 153 aaPredicted RBP5.2□□□□□ -1.58
USA1YML029W FKH1P40466 484 aa5.2□□□□□ -1.58
USA1YML029W RCM1P53972 490 aa5.2□□□□□ -1.58
USA1YML029W MLP1Q02455 1875 aaKnown RBP5.2□□□□□ -1.58
USA1YML029W SEC3P33332 1336 aaKnown RBP5.19□□□□□ -1.58
USA1YML029W ORC1P54784 914 aaPredicted RBP5.18□□□□□ -1.58
USA1YML029W PPH3P32345 308 aa5.18□□□□□ -1.58
USA1YML029W TAP42Q04372 366 aa5.18□□□□□ -1.58
USA1YML029W GRX4P32642 244 aa5.17□□□□□ -1.58
USA1YML029W RTF1P53064 558 aa5.17□□□□□ -1.58
USA1YML029W TY4B-HP0C2J7 1802 aa5.16□□□□□ -1.58
USA1YML029W TY4B-JP47024 1803 aa5.16□□□□□ -1.58
USA1YML029W PRP5P21372 849 aaPredicted RBP5.16□□□□□ -1.58
USA1YML029W YEF3P16521 1044 aaKnown RBP5.15□□□□□ -1.58
USA1YML029W ENT1Q12518 454 aa5.15□□□□□ -1.58
USA1YML029W YML133CQ03099 1374 aa5.15□□□□□ -1.59
USA1YML029W YLL067CQ07888 1374 aa5.15□□□□□ -1.59
USA1YML029W YLL066CQ99208 1374 aa5.15□□□□□ -1.59
USA1YML029W PDI1P17967 522 aaKnown RBP5.15□□□□□ -1.59
USA1YML029W REB1P21538 810 aa5.15□□□□□ -1.59
USA1YML029W YIL055CP40523 627 aaKnown RBP5.14□□□□□ -1.59
USA1YML029W PDS5Q04264 1277 aa5.14□□□□□ -1.59
USA1YML029W RSF2P46974 1380 aa5.14□□□□□ -1.59
USA1YML029W ROM2P51862 1356 aaKnown RBP5.13□□□□□ -1.59
USA1YML029W ENV9Q08651 330 aa5.13□□□□□ -1.59
USA1YML029W PRP45P28004 379 aaPredicted RBP5.13□□□□□ -1.59
USA1YML029W IMH1Q06704 911 aaKnown RBP5.13□□□□□ -1.59
USA1YML029W SLM3Q12093 417 aa5.13□□□□□ -1.59
USA1YML029W CSE4P36012 229 aa5.12□□□□□ -1.59
USA1YML029W TCB1Q12466 1186 aa5.12□□□□□ -1.59
USA1YML029W YMR074CQ04773 145 aa5.11□□□□□ -1.59
USA1YML029W SIR4P11978 1358 aa5.11□□□□□ -1.59
USA1YML029W APC1P53886 1748 aa5.11□□□□□ -1.59
USA1YML029W CTF4Q01454 927 aa5.11□□□□□ -1.59
USA1YML029W FKS3Q04952 1785 aa5.1□□□□□ -1.59
USA1YML029W RPO41P13433 1351 aaKnown RBP5.09□□□□□ -1.59
USA1YML029W MEC3Q02574 474 aa5.09□□□□□ -1.59
USA1YML029W URB1P34241 1764 aaKnown RBP5.09□□□□□ -1.6
USA1YML029W GLN1P32288 370 aaKnown RBP5.08□□□□□ -1.6
USA1YML029W RTG3P38165 486 aa5.08□□□□□ -1.6
USA1YML029W IES2P40154 320 aa5.08□□□□□ -1.6
USA1YML029W YFR016CP43597 1233 aaKnown RBP5.08□□□□□ -1.6
USA1YML029W APP1P53933 587 aa5.08□□□□□ -1.6
USA1YML029W RPS24AP0CX31 135 aaKnown RBP5.08□□□□□ -1.6
USA1YML029W RPS24BP0CX32 135 aaKnown RBP5.08□□□□□ -1.6
USA1YML029W SNF2P22082 1703 aa5.08□□□□□ -1.6
USA1YML029W GTT3P39996 337 aa5.07□□□□□ -1.6
USA1YML029W MSB3P48566 633 aaPredicted RBP5.07□□□□□ -1.6
USA1YML029W YRF1-3P0CX14 1859 aa5.06□□□□□ -1.6
USA1YML029W YRF1-7P0CX15 1859 aa5.06□□□□□ -1.6
USA1YML029W UBP1P25037 809 aa5.06□□□□□ -1.6
USA1YML029W ENP1P38333 483 aaKnown RBP5.06□□□□□ -1.6
USA1YML029W YRF1-6P53819 1859 aa5.06□□□□□ -1.6
USA1YML029W SPT7P35177 1332 aa5.06□□□□□ -1.6
USA1YML029W AUS1Q08409 1394 aa5.06□□□□□ -1.6
USA1YML029W LEU3P08638 886 aa5.05□□□□□ -1.6
USA1YML029W XKS1P42826 600 aa5.05□□□□□ -1.6
USA1YML029W PSD2P53037 1138 aaKnown RBP5.05□□□□□ -1.6
USA1YML029W DPS1P04802 557 aaKnown RBP5.04□□□□□ -1.6
USA1YML029W KAR2P16474 682 aaKnown RBP5.04□□□□□ -1.6
USA1YML029W PRI1P10363 409 aa5.04□□□□□ -1.6
USA1YML029W RPP0P05317 312 aaKnown RBP5.03□□□□□ -1.6
USA1YML029W YIL177CP40434 1758 aa5.03□□□□□ -1.6
USA1YML029W YJL225CP40889 1758 aa5.03□□□□□ -1.6
USA1YML029W NST1P53935 1240 aa5.02□□□□□ -1.61
USA1YML029W LAM6Q08001 693 aa5.02□□□□□ -1.61
USA1YML029W PRP40P33203 583 aaKnown RBP5.02□□□□□ -1.61
USA1YML029W YKL133CP36066 463 aa5.02□□□□□ -1.61
USA1YML029W RPL17AP05740 184 aaKnown RBP5.01□□□□□ -1.61
USA1YML029W RPL17BP46990 184 aaKnown RBP5.01□□□□□ -1.61
USA1YML029W YRF1-4O13559 1382 aa5.01□□□□□ -1.61
USA1YML029W HAA1Q12753 694 aaKnown RBP5.01□□□□□ -1.61
USA1YML029W RCR1P38212 213 aa5□□□□□ -1.61
USA1YML029W DOT5P40553 215 aa5□□□□□ -1.61
USA1YML029W DSD1P53095 428 aa5□□□□□ -1.61
USA1YML029W GAS4Q08271 471 aa5□□□□□ -1.61
USA1YML029W LYS2P07702 1392 aa5□□□□□ -1.61
USA1YML029W SSP1P38871 571 aa5□□□□□ -1.61
USA1YML029W YJL181WP46987 611 aa5□□□□□ -1.61
USA1YML029W HIM1Q06674 414 aa5□□□□□ -1.61
USA1YML029W RIM101P33400 625 aa4.99□□□□□ -1.61
USA1YML029W MDG1P53885 366 aa4.99□□□□□ -1.61
USA1YML029W FOX2Q02207 900 aaKnown RBP4.99□□□□□ -1.61
USA1YML029W BUD31P25337 157 aaPredicted RBP4.99□□□□□ -1.61
USA1YML029W GRX1P25373 110 aaKnown RBP4.99□□□□□ -1.61
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms