RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	VPS72	Q03388	795 aa		4.89	□□□□□ -1.63
NUP85	YJR042W	MRX10	Q05648	414 aa		4.89	□□□□□ -1.63
NUP85	YJR042W	TPS3	P38426	1054 aa	Known RBP	4.89	□□□□□ -1.63
NUP85	YJR042W	ERP5	P38819	212 aa		4.89	□□□□□ -1.63
NUP85	YJR042W	YNL108C	P53929	270 aa		4.89	□□□□□ -1.63
NUP85	YJR042W	TOM20	P35180	183 aa		4.88	□□□□□ -1.63
NUP85	YJR042W	NNF1	P47149	201 aa		4.88	□□□□□ -1.63
NUP85	YJR042W	SCY1	P53009	804 aa		4.88	□□□□□ -1.63
NUP85	YJR042W	MSC6	Q08818	692 aa	Known RBP	4.88	□□□□□ -1.63
NUP85	YJR042W	CIT2	P08679	460 aa		4.88	□□□□□ -1.63
NUP85	YJR042W	SLX5	P32828	619 aa	Known RBP	4.88	□□□□□ -1.63
NUP85	YJR042W	ZDS1	P50111	915 aa	Known RBP	4.88	□□□□□ -1.63
NUP85	YJR042W	YBL113C	Q7M4S9	792 aa		4.88	□□□□□ -1.63
NUP85	YJR042W	ENO1	P00924	437 aa	Known RBP	4.87	□□□□□ -1.63
NUP85	YJR042W	MYO2	P19524	1574 aa	Known RBP	4.87	□□□□□ -1.63
NUP85	YJR042W	BDF1	P35817	686 aa		4.87	□□□□□ -1.63
NUP85	YJR042W	STS1	P38637	319 aa		4.87	□□□□□ -1.63
NUP85	YJR042W	KRI1	P42846	591 aa	Known RBP	4.87	□□□□□ -1.63
NUP85	YJR042W	YOL098C	Q12496	1037 aa		4.87	□□□□□ -1.63
NUP85	YJR042W	ESP1	Q03018	1630 aa		4.87	□□□□□ -1.63
NUP85	YJR042W	STM1	P39015	273 aa	Known RBP	4.86	□□□□□ -1.63
NUP85	YJR042W	TGL4	P36165	910 aa		4.85	□□□□□ -1.63
NUP85	YJR042W	TGL3	P40308	642 aa		4.85	□□□□□ -1.63
NUP85	YJR042W	MDJ2	P42834	146 aa		4.85	□□□□□ -1.63
NUP85	YJR042W	ENO2	P00925	437 aa	Known RBP	4.85	□□□□□ -1.63
NUP85	YJR042W	ISW1	P38144	1129 aa		4.85	□□□□□ -1.63
NUP85	YJR042W	YBL036C	P38197	257 aa		4.85	□□□□□ -1.63
NUP85	YJR042W	RPL34B	P40525	121 aa	Known RBP	4.85	□□□□□ -1.63
NUP85	YJR042W	TSR4	P25040	408 aa		4.84	□□□□□ -1.63
NUP85	YJR042W	SEC8	P32855	1065 aa		4.84	□□□□□ -1.63
NUP85	YJR042W	POL32	P47110	350 aa		4.84	□□□□□ -1.63
NUP85	YJR042W	YLR326W	Q06170	240 aa	Known RBP	4.84	□□□□□ -1.63
NUP85	YJR042W	MMS22	Q06164	1454 aa		4.84	□□□□□ -1.63
NUP85	YJR042W	YDJ1	P25491	409 aa	Known RBP	4.84	□□□□□ -1.64
NUP85	YJR042W	PSE1	P32337	1089 aa	Known RBP	4.84	□□□□□ -1.64
NUP85	YJR042W	ALG12	P53730	551 aa		4.84	□□□□□ -1.64
NUP85	YJR042W	PEP12	P32854	288 aa		4.83	□□□□□ -1.64
NUP85	YJR042W	YHL050C	P38721	697 aa		4.83	□□□□□ -1.64
NUP85	YJR042W	YHR219W	P38900	624 aa		4.83	□□□□□ -1.64
NUP85	YJR042W	VHR2	P40041	505 aa		4.83	□□□□□ -1.64
NUP85	YJR042W	RIM21	P48565	533 aa		4.83	□□□□□ -1.64
NUP85	YJR042W	ALD3	P54114	506 aa		4.83	□□□□□ -1.64
NUP85	YJR042W	YEL077C	Q3E7X8	1277 aa		4.83	□□□□□ -1.64
NUP85	YJR042W	RDS2	P19541	446 aa	Known RBP	4.82	□□□□□ -1.64
NUP85	YJR042W	GRX4	P32642	244 aa		4.82	□□□□□ -1.64
NUP85	YJR042W	MIF2	P35201	549 aa		4.82	□□□□□ -1.64
NUP85	YJR042W	BUD6	P41697	788 aa		4.82	□□□□□ -1.64
NUP85	YJR042W	TAF2	P23255	1407 aa		4.82	□□□□□ -1.64
NUP85	YJR042W	MAK16	P10962	306 aa	Predicted RBP	4.82	□□□□□ -1.64
NUP85	YJR042W	SEC20	P28791	383 aa		4.82	□□□□□ -1.64
NUP85	YJR042W	ENP1	P38333	483 aa	Known RBP	4.82	□□□□□ -1.64
NUP85	YJR042W	OYE2	Q03558	400 aa	Known RBP	4.82	□□□□□ -1.64
NUP85	YJR042W	PTC3	P34221	468 aa	Known RBP	4.81	□□□□□ -1.64
NUP85	YJR042W	YJR107W	P47145	328 aa		4.81	□□□□□ -1.64
NUP85	YJR042W	SVF1	Q05515	481 aa		4.81	□□□□□ -1.64
NUP85	YJR042W	YOL057W	Q08225	711 aa		4.81	□□□□□ -1.64
NUP85	YJR042W	TPM2	P40414	161 aa		4.81	□□□□□ -1.64
NUP85	YJR042W	SVL3	Q03088	825 aa	Known RBP	4.81	□□□□□ -1.64
NUP85	YJR042W	RPA135	P22138	1203 aa	Known RBP	4.8	□□□□□ -1.64
NUP85	YJR042W	RAD59	Q12223	238 aa		4.8	□□□□□ -1.64
NUP85	YJR042W	POL1	P13382	1468 aa		4.8	□□□□□ -1.64
NUP85	YJR042W	PPX1	P38698	397 aa		4.8	□□□□□ -1.64
NUP85	YJR042W	ORC6	P38826	435 aa		4.8	□□□□□ -1.64
NUP85	YJR042W	VAC8	P39968	578 aa		4.8	□□□□□ -1.64
NUP85	YJR042W	YFR016C	P43597	1233 aa	Known RBP	4.8	□□□□□ -1.64
NUP85	YJR042W	STU1	P38198	1513 aa		4.8	□□□□□ -1.64
NUP85	YJR042W	CWC15	Q03772	175 aa	Known RBP	4.79	□□□□□ -1.64
NUP85	YJR042W	JIP5	Q06214	492 aa	Predicted RBP	4.79	□□□□□ -1.64
NUP85	YJR042W	BRE1	Q07457	700 aa	Known RBP	4.79	□□□□□ -1.64
NUP85	YJR042W	MET1	P36150	593 aa		4.78	□□□□□ -1.64
NUP85	YJR042W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
NUP85	YJR042W	TAT2	P38967	592 aa		4.78	□□□□□ -1.64
NUP85	YJR042W	FYV10	P40492	516 aa		4.78	□□□□□ -1.64
NUP85	YJR042W	NIS1	P53939	407 aa		4.78	□□□□□ -1.64
NUP85	YJR042W	MNL2	Q12205	849 aa		4.78	□□□□□ -1.64
NUP85	YJR042W	SSB1	P11484	613 aa	Known RBP	4.78	□□□□□ -1.64
NUP85	YJR042W	SCJ1	P25303	377 aa		4.78	□□□□□ -1.64
NUP85	YJR042W	MET4	P32389	672 aa		4.78	□□□□□ -1.64
NUP85	YJR042W	SSB2	P40150	613 aa	Known RBP	4.78	□□□□□ -1.64
NUP85	YJR042W	FRT1	Q99332	602 aa		4.78	□□□□□ -1.64
NUP85	YJR042W	ATG2	P53855	1592 aa		4.78	□□□□□ -1.64
NUP85	YJR042W	GAL11	P19659	1081 aa		4.77	□□□□□ -1.65
NUP85	YJR042W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.77	□□□□□ -1.65	not detected
NUP85	YJR042W	YJU3	P28321	313 aa		4.77	□□□□□ -1.65
NUP85	YJR042W	PPG1	P32838	368 aa		4.77	□□□□□ -1.65
NUP85	YJR042W	CSE4	P36012	229 aa		4.77	□□□□□ -1.65
NUP85	YJR042W	KOG1	P38873	1557 aa		4.77	□□□□□ -1.65
NUP85	YJR042W	RPN4	Q03465	531 aa		4.77	□□□□□ -1.65
NUP85	YJR042W	YPK9	Q12697	1472 aa		4.77	□□□□□ -1.65
NUP85	YJR042W	BUD4	P47136	1447 aa		4.77	□□□□□ -1.65
NUP85	YJR042W	SSF2	Q12153	453 aa	Predicted RBP	4.77	□□□□□ -1.65
NUP85	YJR042W	RRP14	P36080	434 aa	Known RBP	4.76	□□□□□ -1.65
NUP85	YJR042W	FPR3	P38911	411 aa	Known RBP	4.76	□□□□□ -1.65
NUP85	YJR042W	BOL3	P39724	118 aa		4.76	□□□□□ -1.65
NUP85	YJR042W	TEA1	P47988	759 aa		4.76	□□□□□ -1.65
NUP85	YJR042W	ECM23	Q02710	187 aa		4.76	□□□□□ -1.65
NUP85	YJR042W	ESS1	P22696	170 aa		4.76	□□□□□ -1.65
NUP85	YJR042W	RSC30	P38781	883 aa		4.76	□□□□□ -1.65
NUP85	YJR042W	YJR142W	P47173	342 aa		4.76	□□□□□ -1.65
NUP85	YJR042W	HST2	P53686	357 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 60.7 ms