RNA–Protein interactions for RNA: YHR200W

RPN10, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeastyeast

Gene RPN10, Length 807 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN10YHR200W PSK1P31374 1356 aa18.41■□□□□ 0.54
RPN10YHR200W RCM1P53972 490 aa18.4■□□□□ 0.54
RPN10YHR200W CPS1P27614 576 aa18.35■□□□□ 0.53
RPN10YHR200W FKH1P40466 484 aa18.31■□□□□ 0.52
RPN10YHR200W SPT7P35177 1332 aa18.3■□□□□ 0.52
RPN10YHR200W PPH3P32345 308 aa18.28■□□□□ 0.52
RPN10YHR200W LEU2P04173 364 aaPredicted RBP18.25■□□□□ 0.51
RPN10YHR200W RTG3P38165 486 aa18.25■□□□□ 0.51
RPN10YHR200W MTR4P47047 1073 aaKnown RBP18.24■□□□□ 0.51
RPN10YHR200W MLP1Q02455 1875 aaKnown RBP18.23■□□□□ 0.51
RPN10YHR200W ENP1P38333 483 aaKnown RBP18.22■□□□□ 0.51
RPN10YHR200W PSD2P53037 1138 aaKnown RBP18.22■□□□□ 0.51
RPN10YHR200W YML133CQ03099 1374 aa18.18■□□□□ 0.5
RPN10YHR200W YLL067CQ07888 1374 aa18.18■□□□□ 0.5
RPN10YHR200W YLL066CQ99208 1374 aa18.18■□□□□ 0.5
RPN10YHR200W ADE6P38972 1358 aaKnown RBP18.16■□□□□ 0.5
RPN10YHR200W PDI1P17967 522 aaKnown RBP18.14■□□□□ 0.49
RPN10YHR200W RTF1P53064 558 aa18.14■□□□□ 0.49
RPN10YHR200W LEU3P08638 886 aa18.13■□□□□ 0.49
RPN10YHR200W PRP43P53131 767 aaKnown RBP18.09■□□□□ 0.49
RPN10YHR200W TAP42Q04372 366 aa18.09■□□□□ 0.49
RPN10YHR200W CSE4P36012 229 aa18.07■□□□□ 0.48
RPN10YHR200W GRX4P32642 244 aa18.06■□□□□ 0.48
RPN10YHR200W PTP3P40048 928 aa18.06■□□□□ 0.48
RPN10YHR200W KAR2P16474 682 aaKnown RBP18.01■□□□□ 0.47
RPN10YHR200W RPS24AP0CX31 135 aaKnown RBP18■□□□□ 0.47
RPN10YHR200W RPS24BP0CX32 135 aaKnown RBP18■□□□□ 0.47
RPN10YHR200W NST1P53935 1240 aa18■□□□□ 0.47
RPN10YHR200W IOC4Q04213 475 aa18■□□□□ 0.47
RPN10YHR200W YAH1Q12184 172 aaKnown RBP17.98■□□□□ 0.47
RPN10YHR200W YEF3P16521 1044 aaKnown RBP17.94■□□□□ 0.46
RPN10YHR200W PRP45P28004 379 aaPredicted RBP17.94■□□□□ 0.46
RPN10YHR200W PRP5P21372 849 aaPredicted RBP17.93■□□□□ 0.46
RPN10YHR200W NSR1P27476 414 aaKnown RBP RIP-Chip data17.92■□□□□ 0.46 RIP-Chip
RPN10YHR200W TY4B-HP0C2J7 1802 aa17.92■□□□□ 0.46
RPN10YHR200W TY4B-JP47024 1803 aa17.92■□□□□ 0.46
RPN10YHR200W DPS1P04802 557 aaKnown RBP17.91■□□□□ 0.46
RPN10YHR200W TRK1P12685 1235 aa17.9■□□□□ 0.46
RPN10YHR200W AUS1Q08409 1394 aa17.89■□□□□ 0.45
RPN10YHR200W APP1P53933 587 aa17.88■□□□□ 0.45
RPN10YHR200W GAS4Q08271 471 aa17.88■□□□□ 0.45
RPN10YHR200W RRP5Q05022 1729 aaKnown RBP17.87■□□□□ 0.45
RPN10YHR200W PAP2P53632 584 aaKnown RBP17.86■□□□□ 0.45
RPN10YHR200W RPO41P13433 1351 aaKnown RBP17.85■□□□□ 0.45
RPN10YHR200W HIM1Q06674 414 aa17.85■□□□□ 0.45
RPN10YHR200W RPP0P05317 312 aaKnown RBP17.83■□□□□ 0.44
RPN10YHR200W SLM3Q12093 417 aa17.81■□□□□ 0.44
RPN10YHR200W REB1P21538 810 aa17.79■□□□□ 0.44
RPN10YHR200W MSB3P48566 633 aaPredicted RBP17.79■□□□□ 0.44
RPN10YHR200W TCB1Q12466 1186 aa17.79■□□□□ 0.44
RPN10YHR200W YRF1-2P40105 1681 aa17.79■□□□□ 0.44
RPN10YHR200W SNF2P22082 1703 aa17.78■□□□□ 0.44
RPN10YHR200W ENT1Q12518 454 aa17.78■□□□□ 0.44
RPN10YHR200W RTR1P40084 226 aaPredicted RBP17.76■□□□□ 0.43
RPN10YHR200W YIL055CP40523 627 aaKnown RBP17.75■□□□□ 0.43
RPN10YHR200W YDL144CQ07589 356 aa17.74■□□□□ 0.43
RPN10YHR200W GLN1P32288 370 aaKnown RBP17.73■□□□□ 0.43
RPN10YHR200W RSF2P46974 1380 aa17.72■□□□□ 0.43
RPN10YHR200W PRS1P32895 427 aaKnown RBP17.71■□□□□ 0.43
RPN10YHR200W VPS27P40343 622 aaKnown RBP17.71■□□□□ 0.43
RPN10YHR200W CDC45Q08032 650 aa17.71■□□□□ 0.43
RPN10YHR200W ENV9Q08651 330 aa17.7■□□□□ 0.42
RPN10YHR200W RRP46P53256 223 aaPredicted RBP17.68■□□□□ 0.42
RPN10YHR200W XKS1P42826 600 aa17.67■□□□□ 0.42
RPN10YHR200W FKS3Q04952 1785 aa17.66■□□□□ 0.42
RPN10YHR200W BUB1P41695 1021 aaKnown RBP RIP-Chip data17.66■□□□□ 0.42not detected
RPN10YHR200W AKL1P38080 1108 aaKnown RBP17.65■□□□□ 0.42
RPN10YHR200W PRD1P25375 712 aa17.64■□□□□ 0.41
RPN10YHR200W MPP10P47083 593 aaKnown RBP17.64■□□□□ 0.41
RPN10YHR200W IMH1Q06704 911 aaKnown RBP17.64■□□□□ 0.41
RPN10YHR200W SIR4P11978 1358 aa17.64■□□□□ 0.41
RPN10YHR200W DSD1P53095 428 aa17.63■□□□□ 0.41
RPN10YHR200W CTF4Q01454 927 aa17.63■□□□□ 0.41
RPN10YHR200W APC1P53886 1748 aa17.63■□□□□ 0.41
RPN10YHR200W YRB30P53107 440 aaPredicted RBP17.62■□□□□ 0.41
RPN10YHR200W YIL177CP40434 1758 aa17.61■□□□□ 0.41
RPN10YHR200W YJL225CP40889 1758 aa17.61■□□□□ 0.41
RPN10YHR200W IES2P40154 320 aa17.61■□□□□ 0.41
RPN10YHR200W URB1P34241 1764 aaKnown RBP17.6■□□□□ 0.41
RPN10YHR200W MEC3Q02574 474 aa17.59■□□□□ 0.41
RPN10YHR200W YRF1-4O13559 1382 aa17.55■□□□□ 0.4
RPN10YHR200W HSP104P31539 908 aaKnown RBP17.55■□□□□ 0.4
RPN10YHR200W AOS1Q06624 347 aa17.55■□□□□ 0.4
RPN10YHR200W ROM2P51862 1356 aaKnown RBP17.54■□□□□ 0.4
RPN10YHR200W RCR1P38212 213 aa17.54■□□□□ 0.4
RPN10YHR200W THI22Q06490 572 aa17.53■□□□□ 0.4
RPN10YHR200W YNL050CP53952 270 aa17.52■□□□□ 0.4
RPN10YHR200W YMR074CQ04773 145 aa17.51■□□□□ 0.39
RPN10YHR200W YKL133CP36066 463 aa17.5■□□□□ 0.39
RPN10YHR200W SAP155P43612 1002 aa17.5■□□□□ 0.39
RPN10YHR200W RVB2Q12464 471 aaKnown RBP17.5■□□□□ 0.39
RPN10YHR200W SUI2P20459 304 aaKnown RBP17.49■□□□□ 0.39
RPN10YHR200W TPD3P31383 635 aa17.49■□□□□ 0.39
RPN10YHR200W NTH2P35172 780 aa17.49■□□□□ 0.39
RPN10YHR200W YFR016CP43597 1233 aaKnown RBP17.48■□□□□ 0.39
RPN10YHR200W MAM1P40065 302 aa17.47■□□□□ 0.39
RPN10YHR200W ZDS1P50111 915 aaKnown RBP17.45■□□□□ 0.38
RPN10YHR200W RTT109Q07794 436 aa17.44■□□□□ 0.38
RPN10YHR200W UGA3P26370 528 aa17.43■□□□□ 0.38
RPN10YHR200W HEF3P53978 1044 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 5,963 RNA–protein pairs in 274.7 ms