RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	SIT4	P20604	311 aa		6.55	□□□□□ -1.36
VMA22	YHR060W	BRL1	P38770	471 aa		6.55	□□□□□ -1.36
VMA22	YHR060W	YML020W	Q03722	664 aa		6.55	□□□□□ -1.36
VMA22	YHR060W	SSA2	P10592	639 aa	Known RBP	6.54	□□□□□ -1.36
VMA22	YHR060W	BCK2	P33306	851 aa		6.54	□□□□□ -1.36
VMA22	YHR060W	VRP1	P37370	817 aa		6.54	□□□□□ -1.36
VMA22	YHR060W	CSN12	P47130	423 aa		6.54	□□□□□ -1.36
VMA22	YHR060W	HST2	P53686	357 aa		6.54	□□□□□ -1.36
VMA22	YHR060W	FPK1	P53739	893 aa		6.54	□□□□□ -1.36
VMA22	YHR060W	GEF1	P37020	779 aa		6.53	□□□□□ -1.36
VMA22	YHR060W	ISM1	P48526	1002 aa		6.53	□□□□□ -1.36
VMA22	YHR060W	YNL115C	P53925	644 aa		6.53	□□□□□ -1.36
VMA22	YHR060W	GLN1	P32288	370 aa	Known RBP	6.52	□□□□□ -1.37
VMA22	YHR060W	SLX8	P40072	274 aa		6.52	□□□□□ -1.37
VMA22	YHR060W	STR2	P47164	639 aa		6.52	□□□□□ -1.37
VMA22	YHR060W	SAS4	Q04003	481 aa		6.52	□□□□□ -1.37
VMA22	YHR060W	PRT1	P06103	763 aa	Known RBP	6.51	□□□□□ -1.37
VMA22	YHR060W	GCD11	P32481	527 aa	Known RBP	6.51	□□□□□ -1.37
VMA22	YHR060W	NOP8	Q08287	484 aa	Predicted RBP	6.51	□□□□□ -1.37
VMA22	YHR060W	MMP1	Q12372	583 aa		6.51	□□□□□ -1.37
VMA22	YHR060W	YPR015C	Q12531	247 aa		6.51	□□□□□ -1.37
VMA22	YHR060W	BUD20	Q08004	166 aa	Predicted RBP	6.5	□□□□□ -1.37
VMA22	YHR060W	GYP1	Q08484	637 aa		6.5	□□□□□ -1.37
VMA22	YHR060W	KEX2	P13134	814 aa		6.49	□□□□□ -1.37
VMA22	YHR060W	TFB3	Q03290	321 aa		6.49	□□□□□ -1.37
VMA22	YHR060W	PAT1	P25644	796 aa	Known RBP	6.48	□□□□□ -1.37
VMA22	YHR060W	SLY41	P22215	453 aa		6.47	□□□□□ -1.37
VMA22	YHR060W	XDJ1	P39102	459 aa		6.47	□□□□□ -1.37
VMA22	YHR060W	MRF1	P30775	413 aa	Predicted RBP	6.45	□□□□□ -1.38
VMA22	YHR060W	NOP7	P53261	605 aa	Known RBP	6.45	□□□□□ -1.38
VMA22	YHR060W	SUB2	Q07478	446 aa	Known RBP	6.45	□□□□□ -1.38
VMA22	YHR060W	TY1A-DR4	O74302	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-H	P0C2I4	478 aa	Known RBP	6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-A	P0CX57	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-PR1	P0CX58	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-OR	P0CX59	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-PR2	P0CX60	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-DR5	P0CX65	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-ER2	P0CX66	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-GR3	P0CX67	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-LR1	P0CX68	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-MR2	P0CX69	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	SSA4	P22202	642 aa	Known RBP	6.44	□□□□□ -1.38
VMA22	YHR060W	SCJ1	P25303	377 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	SPT16	P32558	1035 aa	Known RBP	6.44	□□□□□ -1.38
VMA22	YHR060W	SLD2	P34252	453 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	6.44	□□□□□ -1.38	not detected
VMA22	YHR060W	TY1A-JR2	P47099	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-DR1	Q03856	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-ML1	Q04706	440 aa	Known RBP	6.44	□□□□□ -1.38
VMA22	YHR060W	ERF2	Q06551	359 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TYW1	Q08960	810 aa	Known RBP	6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-BR	Q12217	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-NL2	Q12470	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	TY1A-GR2	Q12485	440 aa		6.44	□□□□□ -1.38
VMA22	YHR060W	SEC2	P17065	759 aa		6.43	□□□□□ -1.38
VMA22	YHR060W	ESS1	P22696	170 aa		6.43	□□□□□ -1.38
VMA22	YHR060W	KTR1	P27810	393 aa	Known RBP	6.43	□□□□□ -1.38
VMA22	YHR060W	PUS6	P53294	404 aa		6.43	□□□□□ -1.38
VMA22	YHR060W	LAM6	Q08001	693 aa		6.43	□□□□□ -1.38
VMA22	YHR060W	TBF1	Q02457	562 aa		6.42	□□□□□ -1.38
VMA22	YHR060W	PKH3	Q03306	898 aa	Predicted RBP	6.42	□□□□□ -1.38
VMA22	YHR060W	RPL34B	P40525	121 aa	Known RBP	6.41	□□□□□ -1.38
VMA22	YHR060W	TUB4	P53378	473 aa		6.41	□□□□□ -1.38
VMA22	YHR060W	NAP1	P25293	417 aa	Known RBP	6.4	□□□□□ -1.38
VMA22	YHR060W	RRN7	P40992	514 aa		6.4	□□□□□ -1.38
VMA22	YHR060W	AGE1	Q04412	482 aa		6.39	□□□□□ -1.39
VMA22	YHR060W	ERG12	P07277	443 aa		6.38	□□□□□ -1.39
VMA22	YHR060W	ARG8	P18544	423 aa		6.38	□□□□□ -1.39
VMA22	YHR060W	YJU3	P28321	313 aa		6.38	□□□□□ -1.39
VMA22	YHR060W	BIM1	P40013	344 aa		6.38	□□□□□ -1.39
VMA22	YHR060W	YJL007C	P47080	104 aa		6.38	□□□□□ -1.39
VMA22	YHR060W	RAD59	Q12223	238 aa		6.38	□□□□□ -1.39
VMA22	YHR060W	TRM1	P15565	570 aa	Known RBP	6.37	□□□□□ -1.39
VMA22	YHR060W	KXD1	P53158	218 aa		6.37	□□□□□ -1.39
VMA22	YHR060W	SNU71	P53207	620 aa	Known RBP	6.37	□□□□□ -1.39
VMA22	YHR060W	RPL34A	P87262	121 aa	Predicted RBP	6.37	□□□□□ -1.39
VMA22	YHR060W	RSC30	P38781	883 aa		6.36	□□□□□ -1.39
VMA22	YHR060W	YEL077C	Q3E7X8	1277 aa		6.36	□□□□□ -1.39
VMA22	YHR060W	PKC1	P24583	1151 aa		6.35	□□□□□ -1.39
VMA22	YHR060W	CSE4	P36012	229 aa		6.35	□□□□□ -1.39
VMA22	YHR060W	RPA14	P50106	137 aa		6.35	□□□□□ -1.39
VMA22	YHR060W	ORC1	P54784	914 aa	Predicted RBP	6.35	□□□□□ -1.39
VMA22	YHR060W	PAC1	P39946	494 aa	Known RBP	6.34	□□□□□ -1.39
VMA22	YHR060W	ALR1	Q08269	859 aa		6.34	□□□□□ -1.39
VMA22	YHR060W	YPR097W	Q06839	1073 aa		6.33	□□□□□ -1.4
VMA22	YHR060W	YDL206W	Q12424	762 aa		6.33	□□□□□ -1.4
VMA22	YHR060W	YBL036C	P38197	257 aa		6.32	□□□□□ -1.4
VMA22	YHR060W	ATG32	P40458	529 aa		6.32	□□□□□ -1.4
VMA22	YHR060W	TPD3	P31383	635 aa		6.31	□□□□□ -1.4
VMA22	YHR060W	CDC3	P32457	520 aa	Known RBP	6.31	□□□□□ -1.4
VMA22	YHR060W	AMS1	P22855	1083 aa		6.3	□□□□□ -1.4
VMA22	YHR060W	HXT10	P43581	546 aa		6.3	□□□□□ -1.4
VMA22	YHR060W	PDC1	P06169	563 aa	Known RBP	6.29	□□□□□ -1.4
VMA22	YHR060W	MOD5	P07884	428 aa		6.29	□□□□□ -1.4
VMA22	YHR060W	TIF1	P10081	395 aa	Known RBP	6.29	□□□□□ -1.4
VMA22	YHR060W	MAK16	P10962	306 aa	Predicted RBP	6.29	□□□□□ -1.4
VMA22	YHR060W	SDH2	P21801	266 aa		6.29	□□□□□ -1.4
VMA22	YHR060W	SPT5	P27692	1063 aa	Known RBP	6.29	□□□□□ -1.4
VMA22	YHR060W	MRX12	P47084	519 aa		6.28	□□□□□ -1.4

Retrieved 100 of 5,963 RNA–protein pairs in 7.8 ms