RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	YOR1	P53049	1477 aa		7.17	□□□□□ -1.26
UBC8	YEL012W	STU1	P38198	1513 aa		7.17	□□□□□ -1.26
UBC8	YEL012W	VMA1	P17255	1071 aa	Known RBP	7.15	□□□□□ -1.26
UBC8	YEL012W	SPB4	P25808	606 aa	Predicted RBP	7.15	□□□□□ -1.26
UBC8	YEL012W	SMC4	Q12267	1418 aa		7.15	□□□□□ -1.27
UBC8	YEL012W	VTH1	P40438	1549 aa		7.15	□□□□□ -1.27
UBC8	YEL012W	VTH2	P40890	1549 aa		7.15	□□□□□ -1.27
UBC8	YEL012W	DSF2	P38213	736 aa		7.14	□□□□□ -1.27
UBC8	YEL012W	RPN1	P38764	993 aa	Known RBP	7.14	□□□□□ -1.27
UBC8	YEL012W	TSC11	P40061	1430 aa		7.13	□□□□□ -1.27
UBC8	YEL012W	RTG1	P32607	177 aa		7.12	□□□□□ -1.27
UBC8	YEL012W	PTC3	P34221	468 aa	Known RBP	7.12	□□□□□ -1.27
UBC8	YEL012W	TRP5	P00931	707 aa	Known RBP	7.11	□□□□□ -1.27
UBC8	YEL012W	PBS2	P08018	668 aa		7.1	□□□□□ -1.27
UBC8	YEL012W	SAM3	Q08986	587 aa		7.1	□□□□□ -1.27
UBC8	YEL012W	NCR1	Q12200	1170 aa		7.08	□□□□□ -1.28
UBC8	YEL012W	DOP1	Q03921	1698 aa		7.08	□□□□□ -1.28
UBC8	YEL012W	NUP170	P38181	1502 aa		7.07	□□□□□ -1.28
UBC8	YEL012W	REF2	P42073	533 aa	Predicted RBP	7.06	□□□□□ -1.28
UBC8	YEL012W	SPO14	P36126	1683 aa		7.06	□□□□□ -1.28
UBC8	YEL012W	SEC61	P32915	480 aa		7.05	□□□□□ -1.28
UBC8	YEL012W	YNL035C	P53962	389 aa	Known RBP	7.05	□□□□□ -1.28
UBC8	YEL012W	SNQ2	P32568	1501 aa	Known RBP	7.04	□□□□□ -1.28
UBC8	YEL012W	ULS1	Q08562	1619 aa		7.04	□□□□□ -1.28
UBC8	YEL012W	MYO4	P32492	1471 aa		7.03	□□□□□ -1.28
UBC8	YEL012W	SNT2	P53127	1403 aa		7.02	□□□□□ -1.29
UBC8	YEL012W	GYP5	Q12344	894 aa		7.02	□□□□□ -1.29
UBC8	YEL012W	YNR021W	P53723	404 aa	Known RBP	7.01	□□□□□ -1.29
UBC8	YEL012W	YOR093C	Q12275	1648 aa		7.01	□□□□□ -1.29
UBC8	YEL012W	MAM3	Q12296	706 aa		7	□□□□□ -1.29
UBC8	YEL012W	IES2	P40154	320 aa		6.99	□□□□□ -1.29
UBC8	YEL012W	TFG1	P41895	735 aa	Predicted RBP	6.99	□□□□□ -1.29
UBC8	YEL012W	NUP42	P49686	430 aa	Known RBP	6.99	□□□□□ -1.29
UBC8	YEL012W	COX6	P00427	148 aa		6.97	□□□□□ -1.29
UBC8	YEL012W	DCW1	P36091	449 aa		6.97	□□□□□ -1.29
UBC8	YEL012W	UBP14	P38237	781 aa	Known RBP	6.97	□□□□□ -1.29
UBC8	YEL012W	DMA2	P53924	522 aa		6.97	□□□□□ -1.29
UBC8	YEL012W	YDR090C	Q03193	310 aa		6.97	□□□□□ -1.29
UBC8	YEL012W	MAK21	Q12176	1025 aa	Known RBP	6.97	□□□□□ -1.29
UBC8	YEL012W	DIT2	P21595	489 aa		6.96	□□□□□ -1.3
UBC8	YEL012W	GUT1	P32190	709 aa		6.96	□□□□□ -1.3
UBC8	YEL012W	JIP4	Q03361	876 aa		6.96	□□□□□ -1.3
UBC8	YEL012W	GRE2	Q12068	342 aa	Known RBP	6.96	□□□□□ -1.3
UBC8	YEL012W	HTA1	P04911	132 aa	Known RBP	6.95	□□□□□ -1.3
UBC8	YEL012W	HTA2	P04912	132 aa		6.95	□□□□□ -1.3
UBC8	YEL012W	SOL3	P38858	249 aa		6.95	□□□□□ -1.3
UBC8	YEL012W	MET10	P39692	1035 aa		6.95	□□□□□ -1.3
UBC8	YEL012W	DAN4	P47179	1161 aa		6.95	□□□□□ -1.3
UBC8	YEL012W	ATH1	P48016	1211 aa		6.95	□□□□□ -1.3
UBC8	YEL012W	GLC3	P32775	704 aa		6.94	□□□□□ -1.3
UBC8	YEL012W	VHR2	P40041	505 aa		6.94	□□□□□ -1.3
UBC8	YEL012W	YLR326W	Q06170	240 aa	Known RBP	6.94	□□□□□ -1.3
UBC8	YEL012W	KIN1	P13185	1064 aa		6.93	□□□□□ -1.3
UBC8	YEL012W	YGR273C	P53329	174 aa		6.93	□□□□□ -1.3
UBC8	YEL012W	PDR12	Q02785	1511 aa		6.92	□□□□□ -1.3
UBC8	YEL012W	NST1	P53935	1240 aa		6.92	□□□□□ -1.3
UBC8	YEL012W	GDB1	Q06625	1536 aa		6.91	□□□□□ -1.3
UBC8	YEL012W	YEL023C	P39992	682 aa		6.91	□□□□□ -1.3
UBC8	YEL012W	AIM7	Q12156	149 aa		6.91	□□□□□ -1.3
UBC8	YEL012W	IQG1	Q12280	1495 aa		6.91	□□□□□ -1.3
UBC8	YEL012W	PDR10	P51533	1564 aa		6.91	□□□□□ -1.3
UBC8	YEL012W	PTC4	P38089	393 aa		6.9	□□□□□ -1.3
UBC8	YEL012W	SAP30	P38429	201 aa		6.9	□□□□□ -1.3
UBC8	YEL012W	NUP157	P40064	1391 aa	Known RBP	6.89	□□□□□ -1.31
UBC8	YEL012W	TRM3	Q07527	1436 aa		6.88	□□□□□ -1.31
UBC8	YEL012W	BCK2	P33306	851 aa		6.88	□□□□□ -1.31
UBC8	YEL012W	YDL129W	Q07555	291 aa		6.88	□□□□□ -1.31
UBC8	YEL012W	MLP2	P40457	1679 aa		6.87	□□□□□ -1.31
UBC8	YEL012W	ARO1	P08566	1588 aa	Known RBP	6.87	□□□□□ -1.31
UBC8	YEL012W	KEX1	P09620	729 aa		6.87	□□□□□ -1.31
UBC8	YEL012W	RTT106	P40161	455 aa		6.87	□□□□□ -1.31
UBC8	YEL012W	PDR15	Q04182	1529 aa	Known RBP	6.86	□□□□□ -1.31
UBC8	YEL012W	STH1	P32597	1359 aa		6.86	□□□□□ -1.31
UBC8	YEL012W	CHL1	P22516	861 aa	Predicted RBP	6.86	□□□□□ -1.31
UBC8	YEL012W	YTA7	P40340	1379 aa		6.85	□□□□□ -1.31
UBC8	YEL012W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	6.85	□□□□□ -1.31	not detected
UBC8	YEL012W	ILV3	P39522	585 aa	Known RBP	6.85	□□□□□ -1.31
UBC8	YEL012W	CHC1	P22137	1653 aa	Known RBP	6.84	□□□□□ -1.31
UBC8	YEL012W	RAD54	P32863	898 aa		6.83	□□□□□ -1.32
UBC8	YEL012W	DNF3	Q12674	1656 aa		6.83	□□□□□ -1.32
UBC8	YEL012W	PRE3	P38624	215 aa		6.82	□□□□□ -1.32
UBC8	YEL012W	MPH3	P0CE00	602 aa		6.79	□□□□□ -1.32
UBC8	YEL012W	GUA1	P38625	525 aa	Known RBP	6.79	□□□□□ -1.32
UBC8	YEL012W	KIC1	P38692	1080 aa		6.79	□□□□□ -1.32
UBC8	YEL012W	ORC6	P38826	435 aa		6.79	□□□□□ -1.32
UBC8	YEL012W	ATF2	P53296	535 aa		6.79	□□□□□ -1.32
UBC8	YEL012W	AI4	P03878	556 aa		6.78	□□□□□ -1.32
UBC8	YEL012W	PSE1	P32337	1089 aa	Known RBP	6.78	□□□□□ -1.32
UBC8	YEL012W	PML39	Q03760	334 aa		6.78	□□□□□ -1.32
UBC8	YEL012W	BUD3	P25558	1636 aa		6.78	□□□□□ -1.32
UBC8	YEL012W	USO1	P25386	1790 aa		6.74	□□□□□ -1.33
UBC8	YEL012W	SEC7	P11075	2009 aa	Known RBP	6.73	□□□□□ -1.33
UBC8	YEL012W	GAP1	P19145	602 aa	Predicted RBP	6.73	□□□□□ -1.33
UBC8	YEL012W	SLI15	P38283	698 aa		6.72	□□□□□ -1.33
UBC8	YEL012W	HPC2	Q01448	625 aa		6.71	□□□□□ -1.34
UBC8	YEL012W	RLF2	Q12495	606 aa		6.71	□□□□□ -1.34
UBC8	YEL012W	YSP2	Q06681	1438 aa		6.7	□□□□□ -1.34
UBC8	YEL012W	RGR1	P19263	1082 aa		6.7	□□□□□ -1.34
UBC8	YEL012W	ELP4	Q02884	456 aa	Known RBP	6.7	□□□□□ -1.34
UBC8	YEL012W	YDR344C	Q05510	147 aa		6.7	□□□□□ -1.34

Retrieved 100 of 5,963 RNA–protein pairs in 85.3 ms