RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W TY1A-PR2P0CX60 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-DR5P0CX65 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-ER2P0CX66 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-GR3P0CX67 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-LR1P0CX68 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-MR2P0CX69 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-JR2P47099 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-DR1Q03856 440 aa4.56□□□□□ -1.68
PRP42YDR235W HED1Q03937 162 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-ML1Q04706 440 aaKnown RBP4.56□□□□□ -1.68
PRP42YDR235W TY1A-BRQ12217 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-NL2Q12470 440 aa4.56□□□□□ -1.68
PRP42YDR235W TY1A-GR2Q12485 440 aa4.56□□□□□ -1.68
PRP42YDR235W SEC2P17065 759 aa4.55□□□□□ -1.68
PRP42YDR235W PAT1P25644 796 aaKnown RBP4.54□□□□□ -1.68
PRP42YDR235W RRN7P40992 514 aa4.54□□□□□ -1.68
PRP42YDR235W IFH1P39520 1085 aa4.53□□□□□ -1.68
PRP42YDR235W LCB5Q06147 687 aaKnown RBP4.53□□□□□ -1.68
PRP42YDR235W YDL176WQ12027 708 aa4.53□□□□□ -1.68
PRP42YDR235W ASH1P34233 588 aa4.51□□□□□ -1.69
PRP42YDR235W HST3P53687 447 aa4.48□□□□□ -1.69
PRP42YDR235W MTC5Q03897 1148 aa4.48□□□□□ -1.69
PRP42YDR235W ORC6P38826 435 aa4.47□□□□□ -1.69
PRP42YDR235W MET32Q12041 191 aa4.47□□□□□ -1.69
PRP42YDR235W AFT1P22149 690 aa4.46□□□□□ -1.69
PRP42YDR235W RRD1P40454 393 aaKnown RBP4.46□□□□□ -1.69
PRP42YDR235W MVP1P40959 511 aaKnown RBP4.46□□□□□ -1.7
PRP42YDR235W YPR109WQ06104 294 aa4.44□□□□□ -1.7
PRP42YDR235W REF2P42073 533 aaPredicted RBP4.43□□□□□ -1.7
PRP42YDR235W YJR115WP47152 169 aa4.42□□□□□ -1.7
PRP42YDR235W MOD5P07884 428 aa4.41□□□□□ -1.7
PRP42YDR235W KEX2P13134 814 aa4.41□□□□□ -1.7
PRP42YDR235W RGR1P19263 1082 aa4.4□□□□□ -1.7
PRP42YDR235W PAC1P39946 494 aaKnown RBP4.4□□□□□ -1.7
PRP42YDR235W PUS5Q06244 254 aa4.4□□□□□ -1.7
PRP42YDR235W ERF2Q06551 359 aa4.4□□□□□ -1.7
PRP42YDR235W CAF120P53836 1060 aa4.39□□□□□ -1.71
PRP42YDR235W TRK2P28584 889 aa4.37□□□□□ -1.71
PRP42YDR235W ACO2P39533 789 aa4.37□□□□□ -1.71
PRP42YDR235W COX6P00427 148 aa4.35□□□□□ -1.71
PRP42YDR235W MAK21Q12176 1025 aaKnown RBP4.35□□□□□ -1.71
PRP42YDR235W MSB3P48566 633 aaPredicted RBP4.34□□□□□ -1.71
PRP42YDR235W TUB4P53378 473 aa4.34□□□□□ -1.71
PRP42YDR235W YGR035CP53222 116 aa4.33□□□□□ -1.72
PRP42YDR235W AGE1Q04412 482 aa4.32□□□□□ -1.72
PRP42YDR235W YLR346CQ06139 101 aa4.32□□□□□ -1.72
PRP42YDR235W YPR148CQ06523 435 aa4.32□□□□□ -1.72
PRP42YDR235W OPT2Q06593 877 aa4.32□□□□□ -1.72
PRP42YDR235W UGA3P26370 528 aa4.3□□□□□ -1.72
PRP42YDR235W SRF1Q12516 437 aa4.3□□□□□ -1.72
PRP42YDR235W PTK2P47116 818 aaKnown RBP4.29□□□□□ -1.72
PRP42YDR235W SYH1Q02875 849 aaKnown RBP4.28□□□□□ -1.72
PRP42YDR235W HPF1Q05164 967 aa4.28□□□□□ -1.72
PRP42YDR235W GLY1P37303 387 aaKnown RBP4.27□□□□□ -1.73
PRP42YDR235W YIR007WP40566 764 aa4.27□□□□□ -1.73
PRP42YDR235W VPS70P47161 811 aa4.27□□□□□ -1.73
PRP42YDR235W KXD1P53158 218 aa4.27□□□□□ -1.73
PRP42YDR235W RTF1P53064 558 aa4.26□□□□□ -1.73
PRP42YDR235W TPD3P31383 635 aa4.25□□□□□ -1.73
PRP42YDR235W SCW11P53189 542 aa4.25□□□□□ -1.73
PRP42YDR235W YNL115CP53925 644 aa4.25□□□□□ -1.73
PRP42YDR235W ICP55P40051 511 aa4.24□□□□□ -1.73
PRP42YDR235W HXT10P43581 546 aa4.24□□□□□ -1.73
PRP42YDR235W TYW1Q08960 810 aaKnown RBP4.24□□□□□ -1.73
PRP42YDR235W NUP85P46673 744 aa4.24□□□□□ -1.73
PRP42YDR235W MIP1P15801 1254 aa4.23□□□□□ -1.73
PRP42YDR235W CLB5P30283 435 aa4.23□□□□□ -1.73
PRP42YDR235W PSE1P32337 1089 aaKnown RBP4.23□□□□□ -1.73
PRP42YDR235W TY1A-BLQ12266 440 aa4.23□□□□□ -1.73
PRP42YDR235W LSB3P43603 459 aaKnown RBP4.22□□□□□ -1.73
PRP42YDR235W YPR204WQ08995 1032 aa4.22□□□□□ -1.73
PRP42YDR235W PUS1Q12211 544 aaKnown RBP4.22□□□□□ -1.73
PRP42YDR235W KIP2P28743 706 aa4.21□□□□□ -1.74
PRP42YDR235W PDC1P06169 563 aaKnown RBP4.2□□□□□ -1.74
PRP42YDR235W SIT4P20604 311 aa4.18□□□□□ -1.74
PRP42YDR235W RTT106P40161 455 aa4.18□□□□□ -1.74
PRP42YDR235W MRT4P33201 236 aaKnown RBP4.17□□□□□ -1.74
PRP42YDR235W IXR1P33417 597 aa4.17□□□□□ -1.74
PRP42YDR235W UBP2Q01476 1272 aa4.17□□□□□ -1.74
PRP42YDR235W LSC2P53312 427 aa4.16□□□□□ -1.74
PRP42YDR235W DPH6Q12429 685 aa4.16□□□□□ -1.74
PRP42YDR235W ALR1Q08269 859 aa4.15□□□□□ -1.74
PRP42YDR235W PHM7Q12252 991 aa4.15□□□□□ -1.74
PRP42YDR235W ARG82P07250 355 aa4.13□□□□□ -1.75
PRP42YDR235W NRD1P53617 575 aaKnown RBP RIP-Chip data4.13□□□□□ -1.75 RIP-Chip
PRP42YDR235W PBS2P08018 668 aa4.13□□□□□ -1.75
PRP42YDR235W SLY41P22215 453 aa4.13□□□□□ -1.75
PRP42YDR235W MDJ1P35191 511 aa4.13□□□□□ -1.75
PRP42YDR235W TEA1P47988 759 aa4.13□□□□□ -1.75
PRP42YDR235W RPA14P50106 137 aa4.13□□□□□ -1.75
PRP42YDR235W AAD14P42884 376 aa4.12□□□□□ -1.75
PRP42YDR235W ROG3P43602 733 aa4.12□□□□□ -1.75
PRP42YDR235W NIS1P53939 407 aa4.12□□□□□ -1.75
PRP42YDR235W YPR097WQ06839 1073 aa4.12□□□□□ -1.75
PRP42YDR235W YDL206WQ12424 762 aa4.11□□□□□ -1.75
PRP42YDR235W LYS5P50113 272 aa4.1□□□□□ -1.75
PRP42YDR235W TBF1Q02457 562 aa4.1□□□□□ -1.75
PRP42YDR235W TY1A-MR1Q04215 440 aa4.1□□□□□ -1.75
PRP42YDR235W TCB1Q12466 1186 aa4.1□□□□□ -1.75
PRP42YDR235W OSH7P38755 437 aa4.1□□□□□ -1.75
Retrieved 100 of 5,963 RNA–protein pairs in 149.4 ms