RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIR4	YDR227W	TGL3	P40308	642 aa		3.1	□□□□□ -1.91
SIR4	YDR227W	PDR12	Q02785	1511 aa		3.1	□□□□□ -1.91
SIR4	YDR227W	BCK1	Q01389	1478 aa		3.1	□□□□□ -1.91
SIR4	YDR227W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	3.09	□□□□□ -1.91	not detected
SIR4	YDR227W	LEU3	P08638	886 aa		3.09	□□□□□ -1.92
SIR4	YDR227W	YEF3	P16521	1044 aa	Known RBP	3.09	□□□□□ -1.92
SIR4	YDR227W	SRF1	Q12516	437 aa		3.08	□□□□□ -1.92
SIR4	YDR227W	RPL34A	P87262	121 aa	Predicted RBP	3.08	□□□□□ -1.92
SIR4	YDR227W	MAC1	P35192	417 aa		3.07	□□□□□ -1.92
SIR4	YDR227W	SCT1	P32784	759 aa		3.07	□□□□□ -1.92
SIR4	YDR227W	MLP2	P40457	1679 aa		3.07	□□□□□ -1.92
SIR4	YDR227W	AIM21	P40563	679 aa		3.07	□□□□□ -1.92
SIR4	YDR227W	THI12	P42883	340 aa		3.07	□□□□□ -1.92
SIR4	YDR227W	THI5	P43534	340 aa		3.07	□□□□□ -1.92
SIR4	YDR227W	THI11	P47183	340 aa		3.07	□□□□□ -1.92
SIR4	YDR227W	THI13	Q07748	340 aa		3.07	□□□□□ -1.92
SIR4	YDR227W	PPG1	P32838	368 aa		3.06	□□□□□ -1.92
SIR4	YDR227W	BRN1	P38170	754 aa		3.06	□□□□□ -1.92
SIR4	YDR227W	GLC3	P32775	704 aa		3.06	□□□□□ -1.92
SIR4	YDR227W	YJL007C	P47080	104 aa		3.05	□□□□□ -1.92
SIR4	YDR227W	YRB30	P53107	440 aa	Predicted RBP	3.05	□□□□□ -1.92
SIR4	YDR227W	SRB8	P25648	1427 aa		3.05	□□□□□ -1.92
SIR4	YDR227W	ARO1	P08566	1588 aa	Known RBP	3.04	□□□□□ -1.92
SIR4	YDR227W	YJL181W	P46987	611 aa		3.04	□□□□□ -1.92
SIR4	YDR227W	RPO21	P04050	1733 aa	Known RBP	3.04	□□□□□ -1.92
SIR4	YDR227W	VMR1	P38735	1592 aa		3.04	□□□□□ -1.92
SIR4	YDR227W	TSC11	P40061	1430 aa		3.03	□□□□□ -1.92
SIR4	YDR227W	RTT106	P40161	455 aa		3.03	□□□□□ -1.92
SIR4	YDR227W	ATF2	P53296	535 aa		3.03	□□□□□ -1.92
SIR4	YDR227W	JIP5	Q06214	492 aa	Predicted RBP	3.03	□□□□□ -1.92
SIR4	YDR227W	PDR11	P40550	1411 aa		3.03	□□□□□ -1.92
SIR4	YDR227W	SAP155	P43612	1002 aa		3.03	□□□□□ -1.93
SIR4	YDR227W	ZDS2	P54786	942 aa		3.03	□□□□□ -1.93
SIR4	YDR227W	CAT8	P39113	1433 aa		3.02	□□□□□ -1.93
SIR4	YDR227W	POM152	P39685	1337 aa		3.02	□□□□□ -1.93
SIR4	YDR227W	PRP40	P33203	583 aa	Known RBP	3.02	□□□□□ -1.93
SIR4	YDR227W	SLD2	P34252	453 aa		3.02	□□□□□ -1.93
SIR4	YDR227W	SNU71	P53207	620 aa	Known RBP	3.02	□□□□□ -1.93
SIR4	YDR227W	RSF2	P46974	1380 aa		3.02	□□□□□ -1.93
SIR4	YDR227W	PDR5	P33302	1511 aa	Known RBP	3.02	□□□□□ -1.93
SIR4	YDR227W	SIS1	P25294	352 aa	Known RBP	3.01	□□□□□ -1.93
SIR4	YDR227W	IFH1	P39520	1085 aa		3.01	□□□□□ -1.93
SIR4	YDR227W	ALD3	P54114	506 aa		3.01	□□□□□ -1.93
SIR4	YDR227W	RRT14	P40470	206 aa		3.01	□□□□□ -1.93
SIR4	YDR227W	SUB1	P54000	292 aa	Known RBP	3.01	□□□□□ -1.93
SIR4	YDR227W	YBT1	P32386	1661 aa		3.01	□□□□□ -1.93
SIR4	YDR227W	SNQ2	P32568	1501 aa	Known RBP	3	□□□□□ -1.93
SIR4	YDR227W	POL1	P13382	1468 aa		3	□□□□□ -1.93
SIR4	YDR227W	VTH1	P40438	1549 aa		3	□□□□□ -1.93
SIR4	YDR227W	VTH2	P40890	1549 aa		3	□□□□□ -1.93
SIR4	YDR227W	TRA1	P38811	3744 aa		3	□□□□□ -1.93
SIR4	YDR227W	SDH2	P21801	266 aa		2.99	□□□□□ -1.93
SIR4	YDR227W	TSR4	P25040	408 aa		2.99	□□□□□ -1.93
SIR4	YDR227W	IMH1	Q06704	911 aa	Known RBP	2.99	□□□□□ -1.93
SIR4	YDR227W	YPR204W	Q08995	1032 aa		2.99	□□□□□ -1.93
SIR4	YDR227W	OXP1	P28273	1286 aa		2.99	□□□□□ -1.93
SIR4	YDR227W	VPS72	Q03388	795 aa		2.99	□□□□□ -1.93
SIR4	YDR227W	RPS9A	O13516	197 aa	Known RBP	2.98	□□□□□ -1.93
SIR4	YDR227W	BUD21	Q08492	214 aa	Predicted RBP	2.98	□□□□□ -1.93
SIR4	YDR227W	YLL066C	Q99208	1374 aa		2.98	□□□□□ -1.93
SIR4	YDR227W	YRF1-1	P0CX20	1796 aa		2.98	□□□□□ -1.93
SIR4	YDR227W	YRF1-5	P0CX21	1796 aa		2.98	□□□□□ -1.93
SIR4	YDR227W	YRF1-8	P0CX22	1796 aa		2.98	□□□□□ -1.93
SIR4	YDR227W	KTR7	P40504	517 aa		2.98	□□□□□ -1.93
SIR4	YDR227W	PUS5	Q06244	254 aa		2.98	□□□□□ -1.93
SIR4	YDR227W	YSP2	Q06681	1438 aa		2.98	□□□□□ -1.93
SIR4	YDR227W	NUG1	P40010	520 aa	Known RBP	2.98	□□□□□ -1.93
SIR4	YDR227W	CPS1	P27614	576 aa		2.98	□□□□□ -1.93
SIR4	YDR227W	WHI3	P34761	661 aa	Known RBP	2.98	□□□□□ -1.93
SIR4	YDR227W	RSC30	P38781	883 aa		2.97	□□□□□ -1.93
SIR4	YDR227W	ROM2	P51862	1356 aa	Known RBP	2.97	□□□□□ -1.93
SIR4	YDR227W	CST9	Q06032	482 aa		2.97	□□□□□ -1.93
SIR4	YDR227W	YFL040W	P43562	540 aa		2.97	□□□□□ -1.93
SIR4	YDR227W	YNR014W	P53719	212 aa		2.97	□□□□□ -1.93
SIR4	YDR227W	MDG1	P53885	366 aa		2.97	□□□□□ -1.93
SIR4	YDR227W	HAT1	Q12341	374 aa		2.97	□□□□□ -1.93
SIR4	YDR227W	PIB1	Q06651	286 aa		2.96	□□□□□ -1.94
SIR4	YDR227W	TOM1	Q03280	3268 aa		2.96	□□□□□ -1.94
SIR4	YDR227W	SSA2	P10592	639 aa	Known RBP	2.96	□□□□□ -1.94
SIR4	YDR227W	CDC27	P38042	758 aa		2.96	□□□□□ -1.94
SIR4	YDR227W	ALD4	P46367	519 aa	Known RBP	2.95	□□□□□ -1.94
SIR4	YDR227W	ECM16	Q04217	1267 aa	Known RBP	2.95	□□□□□ -1.94
SIR4	YDR227W	RRN6	P32786	894 aa		2.95	□□□□□ -1.94
SIR4	YDR227W	CKB1	P43639	278 aa		2.95	□□□□□ -1.94
SIR4	YDR227W	LAM6	Q08001	693 aa		2.95	□□□□□ -1.94
SIR4	YDR227W	YBL086C	P38177	466 aa		2.94	□□□□□ -1.94
SIR4	YDR227W	GEF1	P37020	779 aa		2.94	□□□□□ -1.94
SIR4	YDR227W	YLR419W	Q06698	1435 aa	Known RBP	2.94	□□□□□ -1.94
SIR4	YDR227W	YLR271W	Q06152	274 aa		2.94	□□□□□ -1.94
SIR4	YDR227W	RCR1	P38212	213 aa		2.93	□□□□□ -1.94
SIR4	YDR227W	BSD2	P38356	321 aa		2.93	□□□□□ -1.94
SIR4	YDR227W	IES2	P40154	320 aa		2.93	□□□□□ -1.94
SIR4	YDR227W	OYE2	Q03558	400 aa	Known RBP	2.93	□□□□□ -1.94
SIR4	YDR227W	TYW1	Q08960	810 aa	Known RBP	2.93	□□□□□ -1.94
SIR4	YDR227W	TIF6	Q12522	245 aa	Known RBP	2.93	□□□□□ -1.94
SIR4	YDR227W	SLX5	P32828	619 aa	Known RBP	2.93	□□□□□ -1.94
SIR4	YDR227W	ERG12	P07277	443 aa		2.93	□□□□□ -1.94
SIR4	YDR227W	SPT21	P35209	758 aa		2.93	□□□□□ -1.94
SIR4	YDR227W	SRP40	P32583	406 aa	Predicted RBP	2.92	□□□□□ -1.94
SIR4	YDR227W	BDF1	P35817	686 aa		2.92	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 42.7 ms