RNA–Protein interactions for RNA: YDL077C

VAM6, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VAM6, Length 3,150 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM6YDL077C AIR1P40507 360 aaKnown RBP1.46□□□□□ -2.18
VAM6YDL077C CST6P40535 587 aa1.46□□□□□ -2.18
VAM6YDL077C SPP41P38904 1435 aa1.46□□□□□ -2.18
VAM6YDL077C QCR6P00127 147 aa1.46□□□□□ -2.18
VAM6YDL077C STR2P47164 639 aa1.46□□□□□ -2.18
VAM6YDL077C XRN1P22147 1528 aaKnown RBP1.45□□□□□ -2.18
VAM6YDL077C SIS2P36024 562 aa1.45□□□□□ -2.18
VAM6YDL077C HST3P53687 447 aa1.45□□□□□ -2.18
VAM6YDL077C LAM6Q08001 693 aa1.45□□□□□ -2.18
VAM6YDL077C ENP1P38333 483 aaKnown RBP1.45□□□□□ -2.18
VAM6YDL077C RIX1P38883 763 aaPredicted RBP1.45□□□□□ -2.18
VAM6YDL077C RRN7P40992 514 aa1.45□□□□□ -2.18
VAM6YDL077C TCB2P48231 1178 aa1.45□□□□□ -2.18
VAM6YDL077C YDR444WQ04093 687 aa1.45□□□□□ -2.18
VAM6YDL077C MET22P32179 357 aa1.45□□□□□ -2.18
VAM6YDL077C REF2P42073 533 aaPredicted RBP1.45□□□□□ -2.18
VAM6YDL077C CLA4P48562 842 aa1.45□□□□□ -2.18
VAM6YDL077C HED1Q03937 162 aa1.45□□□□□ -2.18
VAM6YDL077C ENV9Q08651 330 aa1.45□□□□□ -2.18
VAM6YDL077C SEC3P33332 1336 aaKnown RBP1.45□□□□□ -2.18
VAM6YDL077C UFD4P33202 1483 aa1.44□□□□□ -2.18
VAM6YDL077C YRB30P53107 440 aaPredicted RBP1.44□□□□□ -2.18
VAM6YDL077C STH1P32597 1359 aa1.44□□□□□ -2.18
VAM6YDL077C NUP170P38181 1502 aa1.44□□□□□ -2.18
VAM6YDL077C BDP1P46678 594 aa1.44□□□□□ -2.18
VAM6YDL077C ASH1P34233 588 aa1.43□□□□□ -2.18
VAM6YDL077C ECM5Q03214 1411 aa1.43□□□□□ -2.18
VAM6YDL077C IRC20Q06554 1556 aa1.43□□□□□ -2.18
VAM6YDL077C PEP1P32319 1579 aa1.43□□□□□ -2.18
VAM6YDL077C MMS22Q06164 1454 aa1.43□□□□□ -2.18
VAM6YDL077C MNN4P36044 1178 aa1.43□□□□□ -2.18
VAM6YDL077C YPR109WQ06104 294 aa1.43□□□□□ -2.18
VAM6YDL077C PLP2Q12017 286 aa1.43□□□□□ -2.18
VAM6YDL077C MAK21Q12176 1025 aaKnown RBP1.43□□□□□ -2.18
VAM6YDL077C AIM44Q99299 758 aa1.43□□□□□ -2.18
VAM6YDL077C YDR090CQ03193 310 aa1.43□□□□□ -2.18
VAM6YDL077C TY1A-DR4O74302 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-HP0C2I4 478 aaKnown RBP1.42□□□□□ -2.18
VAM6YDL077C TY1A-AP0CX57 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-PR1P0CX58 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-ORP0CX59 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-PR2P0CX60 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-DR5P0CX65 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-ER2P0CX66 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-GR3P0CX67 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-LR1P0CX68 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-MR2P0CX69 440 aa1.42□□□□□ -2.18
VAM6YDL077C GAP1P19145 602 aaPredicted RBP1.42□□□□□ -2.18
VAM6YDL077C ORC6P38826 435 aa1.42□□□□□ -2.18
VAM6YDL077C RPS0BP46654 252 aaKnown RBP1.42□□□□□ -2.18
VAM6YDL077C TY1A-JR2P47099 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-DR1Q03856 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-ML1Q04706 440 aaKnown RBP1.42□□□□□ -2.18
VAM6YDL077C LCB5Q06147 687 aaKnown RBP1.42□□□□□ -2.18
VAM6YDL077C SAS10Q12136 610 aaPredicted RBP1.42□□□□□ -2.18
VAM6YDL077C TY1A-BRQ12217 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-NL2Q12470 440 aa1.42□□□□□ -2.18
VAM6YDL077C TY1A-GR2Q12485 440 aa1.42□□□□□ -2.18
VAM6YDL077C AFT1P22149 690 aa1.41□□□□□ -2.18
VAM6YDL077C CHZ1P40019 153 aaPredicted RBP1.41□□□□□ -2.18
VAM6YDL077C MVP1P40959 511 aaKnown RBP1.41□□□□□ -2.18
VAM6YDL077C YLR346CQ06139 101 aa1.41□□□□□ -2.18
VAM6YDL077C SRF1Q12516 437 aa1.41□□□□□ -2.18
VAM6YDL077C KEX2P13134 814 aa1.41□□□□□ -2.18
VAM6YDL077C SEC2P17065 759 aa1.41□□□□□ -2.18
VAM6YDL077C VPS70P47161 811 aa1.41□□□□□ -2.18
VAM6YDL077C MON2P48563 1636 aaPredicted RBP1.4□□□□□ -2.18
VAM6YDL077C CLB5P30283 435 aa1.4□□□□□ -2.19
VAM6YDL077C KXD1P53158 218 aa1.4□□□□□ -2.19
VAM6YDL077C SPT6P23615 1451 aaKnown RBP1.4□□□□□ -2.19
VAM6YDL077C COX6P00427 148 aa1.4□□□□□ -2.19
VAM6YDL077C UGA3P26370 528 aa1.4□□□□□ -2.19
VAM6YDL077C RRD1P40454 393 aaKnown RBP1.4□□□□□ -2.19
VAM6YDL077C YJR115WP47152 169 aa1.4□□□□□ -2.19
VAM6YDL077C MTC5Q03897 1148 aa1.4□□□□□ -2.19
VAM6YDL077C IOC4Q04213 475 aa1.4□□□□□ -2.19
VAM6YDL077C PUS5Q06244 254 aa1.4□□□□□ -2.19
VAM6YDL077C MET32Q12041 191 aa1.4□□□□□ -2.19
VAM6YDL077C HSP82P02829 709 aaKnown RBP1.39□□□□□ -2.19
VAM6YDL077C RGR1P19263 1082 aa1.39□□□□□ -2.19
VAM6YDL077C FPR3P38911 411 aaKnown RBP1.39□□□□□ -2.19
VAM6YDL077C IKI3Q06706 1349 aaKnown RBP1.39□□□□□ -2.19
VAM6YDL077C SIN3P22579 1536 aa1.39□□□□□ -2.19
VAM6YDL077C PAC1P39946 494 aaKnown RBP1.39□□□□□ -2.19
VAM6YDL077C YGR035CP53222 116 aa1.39□□□□□ -2.19
VAM6YDL077C CAF120P53836 1060 aa1.39□□□□□ -2.19
VAM6YDL077C PDR5P33302 1511 aaKnown RBP1.39□□□□□ -2.19
VAM6YDL077C SYH1Q02875 849 aaKnown RBP1.39□□□□□ -2.19
VAM6YDL077C MLP2P40457 1679 aa1.38□□□□□ -2.19
VAM6YDL077C SMC4Q12267 1418 aa1.38□□□□□ -2.19
VAM6YDL077C THO2P53552 1597 aaKnown RBP1.38□□□□□ -2.19
VAM6YDL077C YTA7P40340 1379 aa1.38□□□□□ -2.19
VAM6YDL077C KIP2P28743 706 aa1.38□□□□□ -2.19
VAM6YDL077C YIR014WP40570 242 aa1.38□□□□□ -2.19
VAM6YDL077C TUB4P53378 473 aa1.38□□□□□ -2.19
VAM6YDL077C YPR148CQ06523 435 aa1.38□□□□□ -2.19
VAM6YDL077C ERF2Q06551 359 aa1.38□□□□□ -2.19
VAM6YDL077C TYW1Q08960 810 aaKnown RBP1.38□□□□□ -2.19
VAM6YDL077C YLR419WQ06698 1435 aaKnown RBP1.38□□□□□ -2.19
VAM6YDL077C RKM3P38222 552 aa1.38□□□□□ -2.19
Retrieved 100 of 5,963 RNA–protein pairs in 31.5 ms