RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 TSPY10P0CW01 314 aa15.93■□□□□ 0.14
LIG1-207ENST00000594759 MYH16Q9H6N6 1097 aa15.93■□□□□ 0.14
LIG1-207ENST00000594759 CDK11BP21127 795 aaKnown RBP15.93■□□□□ 0.14
LIG1-207ENST00000594759 PLEKHD1A6NEE1 506 aa15.92■□□□□ 0.14
LIG1-207ENST00000594759 KDM2AQ9Y2K7 1162 aa15.92■□□□□ 0.14
LIG1-207ENST00000594759 WASHC2AQ641Q2 1341 aa15.92■□□□□ 0.14
LIG1-207ENST00000594759 FHOD3Q2V2M9 1422 aa15.91■□□□□ 0.14
LIG1-207ENST00000594759 FRAT2O75474 233 aaPredicted RBP15.91■□□□□ 0.14
LIG1-207ENST00000594759 CFDP1Q9UEE9 299 aaPredicted RBP15.91■□□□□ 0.14
LIG1-207ENST00000594759 MSNP26038 577 aaKnown RBP15.9■□□□□ 0.14
LIG1-207ENST00000594759 RCAN3Q9UKA8 241 aa15.9■□□□□ 0.14
LIG1-207ENST00000594759 FHAD1B1AJZ9 1412 aa15.9■□□□□ 0.14
LIG1-207ENST00000594759 IGF1RP08069 1367 aa15.9■□□□□ 0.14
LIG1-207ENST00000594759 SYNJ1O43426 1573 aa15.89■□□□□ 0.13
LIG1-207ENST00000594759 RAD54L2Q9Y4B4 1467 aa15.89■□□□□ 0.13
LIG1-207ENST00000594759 PRKRIP1Q9H875 184 aaPredicted RBP15.89■□□□□ 0.13
LIG1-207ENST00000594759 EXOC6Q8TAG9 804 aa15.89■□□□□ 0.13
LIG1-207ENST00000594759 AMER1Q5JTC6 1135 aaPredicted RBP15.88■□□□□ 0.13
LIG1-207ENST00000594759 FGD5Q6ZNL6 1462 aa15.86■□□□□ 0.13
LIG1-207ENST00000594759 WASHC2CQ9Y4E1 1318 aa15.86■□□□□ 0.13
LIG1-207ENST00000594759 SPRYD3Q8NCJ5 442 aa15.85■□□□□ 0.13
LIG1-207ENST00000594759 BACH2Q9BYV9 841 aa15.85■□□□□ 0.13
LIG1-207ENST00000594759 NESP48681 1621 aa15.85■□□□□ 0.13
LIG1-207ENST00000594759 CCDC184Q52MB2 194 aa15.84■□□□□ 0.13
LIG1-207ENST00000594759 DNTTIP2Q5QJE6 756 aaKnown RBP15.84■□□□□ 0.13
LIG1-207ENST00000594759 CHGAP10645 457 aaKnown RBP15.82■□□□□ 0.12
LIG1-207ENST00000594759 NPM1P06748 294 aaKnown RBP eCLIP15.81■□□□□ 0.12
LIG1-207ENST00000594759 WDR97A6NE52 1622 aa15.81■□□□□ 0.12
LIG1-207ENST00000594759 GOLGA6L22H0YM25 854 aa15.81■□□□□ 0.12
LIG1-207ENST00000594759 FOXD1Q16676 465 aa15.8■□□□□ 0.12
LIG1-207ENST00000594759 FAM13BQ9NYF5 915 aa15.8■□□□□ 0.12
LIG1-207ENST00000594759 SENP3Q9H4L4 574 aaPredicted RBP15.8■□□□□ 0.12
LIG1-207ENST00000594759 RGL3Q3MIN7 710 aa15.79■□□□□ 0.12
LIG1-207ENST00000594759 AKNAQ7Z591 1439 aa15.79■□□□□ 0.12
LIG1-207ENST00000594759 RRP1P56182 461 aaKnown RBP15.79■□□□□ 0.12
LIG1-207ENST00000594759 FAM161AQ3B820 660 aa15.79■□□□□ 0.12
LIG1-207ENST00000594759 CFTRP13569 1480 aa15.79■□□□□ 0.12
LIG1-207ENST00000594759 UNC13AQ9UPW8 1703 aa15.78■□□□□ 0.12
LIG1-207ENST00000594759 PTMAP06454 111 aaKnown RBP15.76■□□□□ 0.11
LIG1-207ENST00000594759 TPM2P07951 284 aa15.75■□□□□ 0.11
LIG1-207ENST00000594759 PDE4CQ08493 712 aa15.75■□□□□ 0.11
LIG1-207ENST00000594759 PLIN1O60240 522 aa15.73■□□□□ 0.11
LIG1-207ENST00000594759 ARHGAP35Q9NRY4 1499 aa15.73■□□□□ 0.11
LIG1-207ENST00000594759 CC2D2AQ9P2K1 1620 aa15.72■□□□□ 0.11
LIG1-207ENST00000594759 KIF21BO75037 1637 aa15.72■□□□□ 0.11
LIG1-207ENST00000594759 FMN1Q68DA7 1419 aa15.71■□□□□ 0.11
LIG1-207ENST00000594759 CUX1P39880 1505 aa15.71■□□□□ 0.11
LIG1-207ENST00000594759 RBM10P98175 930 aaKnown RBP15.7■□□□□ 0.1
LIG1-207ENST00000594759 MAP7D2Q96T17 732 aa15.7■□□□□ 0.1
LIG1-207ENST00000594759 WDR43Q15061 677 aaKnown RBP eCLIP15.7■□□□□ 0.12e-6■■■■■ 54.5
LIG1-207ENST00000594759 POGKQ9P215 609 aa15.7■□□□□ 0.1
LIG1-207ENST00000594759 PDCL3Q9H2J4 239 aa15.69■□□□□ 0.1
LIG1-207ENST00000594759 L3MBTL2Q969R5 705 aa15.69■□□□□ 0.1
LIG1-207ENST00000594759 AQRO60306 1485 aaKnown RBP eCLIP15.69■□□□□ 0.12e-7■■■■■ 34
LIG1-207ENST00000594759 PLPPR3Q6T4P5 718 aa15.69■□□□□ 0.1
LIG1-207ENST00000594759 JPH4Q96JJ6 628 aa15.68■□□□□ 0.1
LIG1-207ENST00000594759 RRBP1Q9P2E9 1410 aaKnown RBP15.68■□□□□ 0.1
LIG1-207ENST00000594759 MRE11P49959 708 aa15.68■□□□□ 0.1
LIG1-207ENST00000594759 ARAP1Q96P48 1450 aa15.68■□□□□ 0.1
LIG1-207ENST00000594759 GAPVD1Q14C86 1478 aa15.66■□□□□ 0.1
LIG1-207ENST00000594759 ESPNB1AK53 854 aa15.66■□□□□ 0.1
LIG1-207ENST00000594759 CENPQQ7L2Z9 268 aaPredicted RBP15.66■□□□□ 0.1
LIG1-207ENST00000594759 HSCBQ8IWL3 235 aa15.66■□□□□ 0.1
LIG1-207ENST00000594759 CRBNQ96SW2 442 aa15.66■□□□□ 0.1
LIG1-207ENST00000594759 ZBTB7CA1YPR0 619 aa15.64■□□□□ 0.09
LIG1-207ENST00000594759 PDE3BQ13370 1112 aa15.64■□□□□ 0.09
LIG1-207ENST00000594759 HMGXB3Q12766 1538 aa15.64■□□□□ 0.09
LIG1-207ENST00000594759 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.64■□□□□ 0.09
LIG1-207ENST00000594759 GBP4Q96PP9 640 aa15.63■□□□□ 0.09
LIG1-207ENST00000594759 CNTLNQ9NXG0 1405 aa15.63■□□□□ 0.09
LIG1-207ENST00000594759 HSP90AB1P08238 724 aaKnown RBP15.63■□□□□ 0.09
LIG1-207ENST00000594759 KIAA1211Q6ZU35 1233 aa15.63■□□□□ 0.09
LIG1-207ENST00000594759 PRXQ9BXM0 1461 aa15.62■□□□□ 0.09
LIG1-207ENST00000594759 TOP2BQ02880 1626 aa15.62■□□□□ 0.09
LIG1-207ENST00000594759 RRAGDQ9NQL2 400 aaPredicted RBP15.62■□□□□ 0.09
LIG1-207ENST00000594759 CLCN1P35523 988 aa15.62■□□□□ 0.09
LIG1-207ENST00000594759 SKAP1Q86WV1 359 aa15.62■□□□□ 0.09
LIG1-207ENST00000594759 CARD11Q9BXL7 1154 aa15.61■□□□□ 0.09
LIG1-207ENST00000594759 R3HCC1Q9Y3T6 440 aaKnown RBP15.61■□□□□ 0.09
LIG1-207ENST00000594759 SMG6Q86US8 1419 aaKnown RBP15.6■□□□□ 0.09
LIG1-207ENST00000594759 DDX11L8A8MPP1 907 aa15.6■□□□□ 0.09
LIG1-207ENST00000594759 CCDC7Q96M83 1385 aa15.6■□□□□ 0.09
LIG1-207ENST00000594759 MTERF4Q7Z6M4 381 aaKnown RBP15.59■□□□□ 0.09
LIG1-207ENST00000594759 PHLDB1Q86UU1 1377 aa15.59■□□□□ 0.09
LIG1-207ENST00000594759 CC2D1BQ5T0F9 858 aaKnown RBP15.58■□□□□ 0.09
LIG1-207ENST00000594759 DCAF11Q8TEB1 546 aa15.58■□□□□ 0.09
LIG1-207ENST00000594759 MPHOSPH9Q99550 1183 aa15.58■□□□□ 0.09
LIG1-207ENST00000594759 PKD2Q13563 968 aa15.57■□□□□ 0.08
LIG1-207ENST00000594759 TRAK2O60296 914 aa15.57■□□□□ 0.08
LIG1-207ENST00000594759 HNRNPMP52272 730 aaKnown RBP eCLIP15.57■□□□□ 0.08
LIG1-207ENST00000594759 CARMIL2Q6F5E8 1435 aa15.57■□□□□ 0.08
LIG1-207ENST00000594759 POLA1P09884 1462 aaPredicted RBP15.57■□□□□ 0.08
LIG1-207ENST00000594759 STAG3Q9UJ98 1225 aa15.56■□□□□ 0.08
LIG1-207ENST00000594759 PTMSP20962 102 aa15.56■□□□□ 0.08
LIG1-207ENST00000594759 KTN1Q86UP2 1357 aaKnown RBP15.55■□□□□ 0.08
LIG1-207ENST00000594759 TOPBP1Q92547 1522 aa15.55■□□□□ 0.08
LIG1-207ENST00000594759 KIF7Q2M1P5 1343 aa15.55■□□□□ 0.08
LIG1-207ENST00000594759 ZNF644Q9H582 1327 aaPredicted RBP15.55■□□□□ 0.08
LIG1-207ENST00000594759 CHMP5Q9NZZ3 219 aa15.53■□□□□ 0.08
LIG1-207ENST00000594759 PEG3Q9GZU2 1588 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms