RNA–Protein interactions for RNA: ENST00000570827.6

USP43-203, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 2

Gene USP43, Length 3,624 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-203ENST00000570827 EXOC6Q8TAG9 804 aa13.23□□□□□ -0.29
USP43-203ENST00000570827 CARD11Q9BXL7 1154 aa13.23□□□□□ -0.29
USP43-203ENST00000570827 PLIN1O60240 522 aa13.22□□□□□ -0.29
USP43-203ENST00000570827 AQRO60306 1485 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP43-203ENST00000570827 RGS3P49796 1198 aa13.21□□□□□ -0.29
USP43-203ENST00000570827 GAPVD1Q14C86 1478 aa13.21□□□□□ -0.29
USP43-203ENST00000570827 ABCA10Q8WWZ4 1543 aa13.21□□□□□ -0.29
USP43-203ENST00000570827 CC2D1BQ5T0F9 858 aaKnown RBP13.21□□□□□ -0.3
USP43-203ENST00000570827 FMN1Q68DA7 1419 aa13.2□□□□□ -0.3
USP43-203ENST00000570827 SKAP1Q86WV1 359 aa13.2□□□□□ -0.3
USP43-203ENST00000570827 PRDM2Q13029 1718 aa13.2□□□□□ -0.3
USP43-203ENST00000570827 KIF7Q2M1P5 1343 aa13.19□□□□□ -0.3
USP43-203ENST00000570827 NBPF8Q3BBV2 869 aa13.19□□□□□ -0.3
USP43-203ENST00000570827 PCF11O94913 1555 aaKnown RBP13.18□□□□□ -0.3
USP43-203ENST00000570827 CCDC7Q96M83 1385 aa13.17□□□□□ -0.3
USP43-203ENST00000570827 RCAN3Q9UKA8 241 aa13.17□□□□□ -0.3
USP43-203ENST00000570827 FGD6Q6ZV73 1430 aa13.17□□□□□ -0.3
USP43-203ENST00000570827 CANXP27824 592 aaKnown RBP13.16□□□□□ -0.3
USP43-203ENST00000570827 CHGAP10645 457 aaKnown RBP13.16□□□□□ -0.3
USP43-203ENST00000570827 PDE4AP27815 886 aa13.16□□□□□ -0.3
USP43-203ENST00000570827 UACAQ9BZF9 1416 aa13.15□□□□□ -0.3
USP43-203ENST00000570827 PKD2Q13563 968 aa13.15□□□□□ -0.3
USP43-203ENST00000570827 DCAF11Q8TEB1 546 aa13.15□□□□□ -0.3
USP43-203ENST00000570827 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.14□□□□□ -0.31
USP43-203ENST00000570827 CNTLNQ9NXG0 1405 aa13.14□□□□□ -0.31
USP43-203ENST00000570827 PPM1GO15355 546 aaPredicted RBP13.14□□□□□ -0.31
USP43-203ENST00000570827 PRKCSHP14314 528 aaPredicted RBP13.14□□□□□ -0.31
USP43-203ENST00000570827 TSPY4P0CV99 314 aa13.13□□□□□ -0.31
USP43-203ENST00000570827 TSPY10P0CW01 314 aa13.13□□□□□ -0.31
USP43-203ENST00000570827 HNRNPMP52272 730 aaKnown RBP eCLIP13.13□□□□□ -0.31
USP43-203ENST00000570827 LAMC3Q9Y6N6 1575 aa13.12□□□□□ -0.31
USP43-203ENST00000570827 CASKIN1Q8WXD9 1431 aa13.11□□□□□ -0.31
USP43-203ENST00000570827 CFAP43Q8NDM7 1665 aa13.1□□□□□ -0.31
USP43-203ENST00000570827 PLEKHD1A6NEE1 506 aa13.1□□□□□ -0.31
USP43-203ENST00000570827 FYCO1Q9BQS8 1478 aa13.09□□□□□ -0.31
USP43-203ENST00000570827 ST20-MTHFSA0A0A6YYL1 179 aa13.09□□□□□ -0.31
USP43-203ENST00000570827 TCERG1O14776 1098 aaKnown RBP13.09□□□□□ -0.31
USP43-203ENST00000570827 CDCA7LQ96GN5 454 aa13.09□□□□□ -0.31
USP43-203ENST00000570827 BRPF3Q9ULD4 1205 aa13.09□□□□□ -0.31
USP43-203ENST00000570827 EFCAB5A4FU69 1503 aa13.09□□□□□ -0.31
USP43-203ENST00000570827 RRP1P56182 461 aaKnown RBP13.09□□□□□ -0.31
USP43-203ENST00000570827 DDRGK1Q96HY6 314 aa13.08□□□□□ -0.31
USP43-203ENST00000570827 KIF21AQ7Z4S6 1674 aa13.08□□□□□ -0.32
USP43-203ENST00000570827 WDR43Q15061 677 aaKnown RBP eCLIP13.08□□□□□ -0.32
USP43-203ENST00000570827 ERCC6Q03468 1493 aa13.07□□□□□ -0.32
USP43-203ENST00000570827 PTPRKQ15262 1439 aa13.07□□□□□ -0.32
USP43-203ENST00000570827 TNNT2P45379 298 aaPredicted RBP13.06□□□□□ -0.32
USP43-203ENST00000570827 CRBNQ96SW2 442 aa13.06□□□□□ -0.32
USP43-203ENST00000570827 NAIPQ13075 1403 aa13.05□□□□□ -0.32
USP43-203ENST00000570827 ZNF608Q9ULD9 1512 aaPredicted RBP13.05□□□□□ -0.32
USP43-203ENST00000570827 PLPPR3Q6T4P5 718 aa13.05□□□□□ -0.32
USP43-203ENST00000570827 SPRYD3Q8NCJ5 442 aa13.05□□□□□ -0.32
USP43-203ENST00000570827 USP47Q96K76 1375 aa13.04□□□□□ -0.32
USP43-203ENST00000570827 NEUROD2Q15784 382 aa13.04□□□□□ -0.32
USP43-203ENST00000570827 CUL7Q14999 1698 aa13.04□□□□□ -0.32
USP43-203ENST00000570827 HFM1A2PYH4 1435 aa13.03□□□□□ -0.32
USP43-203ENST00000570827 SLKQ9H2G2 1235 aaPredicted RBP13.03□□□□□ -0.32
USP43-203ENST00000570827 NCOA2Q15596 1464 aa13.03□□□□□ -0.32
USP43-203ENST00000570827 MYOM3Q5VTT5 1437 aa13.03□□□□□ -0.32
USP43-203ENST00000570827 PNISRQ8TF01 805 aaKnown RBP13.01□□□□□ -0.33
USP43-203ENST00000570827 GSE1Q14687 1217 aa13□□□□□ -0.33
USP43-203ENST00000570827 NUP155O75694 1391 aa12.99□□□□□ -0.33
USP43-203ENST00000570827 CTTNBP2Q8WZ74 1663 aa12.99□□□□□ -0.33
USP43-203ENST00000570827 FRAT1Q92837 279 aaPredicted RBP12.99□□□□□ -0.33
USP43-203ENST00000570827 CDK13Q14004 1512 aaKnown RBP12.99□□□□□ -0.33
USP43-203ENST00000570827 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.99□□□□□ -0.33
USP43-203ENST00000570827 JPH4Q96JJ6 628 aa12.99□□□□□ -0.33
USP43-203ENST00000570827 SNAPC4Q5SXM2 1469 aa12.99□□□□□ -0.33
USP43-203ENST00000570827 NFKBIBQ15653 356 aa12.98□□□□□ -0.33
USP43-203ENST00000570827 NUTM2DQ5VT03 806 aaPredicted RBP12.98□□□□□ -0.33
USP43-203ENST00000570827 MRC2Q9UBG0 1479 aa12.97□□□□□ -0.33
USP43-203ENST00000570827 CCDC146Q8IYE0 955 aa12.97□□□□□ -0.33
USP43-203ENST00000570827 BACH2Q9BYV9 841 aa12.97□□□□□ -0.33
USP43-203ENST00000570827 ABCA5Q8WWZ7 1642 aa12.97□□□□□ -0.33
USP43-203ENST00000570827 NLRP13Q86W25 1043 aa12.96□□□□□ -0.33
USP43-203ENST00000570827 GZF1Q9H116 711 aaPredicted RBP12.96□□□□□ -0.33
USP43-203ENST00000570827 MYBBP1AQ9BQG0 1328 aaKnown RBP12.96□□□□□ -0.33
USP43-203ENST00000570827 SMG6Q86US8 1419 aaKnown RBP12.96□□□□□ -0.34
USP43-203ENST00000570827 KTN1Q86UP2 1357 aaKnown RBP12.95□□□□□ -0.34
USP43-203ENST00000570827 SAFB2Q14151 953 aaKnown RBP eCLIP12.95□□□□□ -0.34
USP43-203ENST00000570827 RALBP1Q15311 655 aa12.95□□□□□ -0.34
USP43-203ENST00000570827 ARID4BQ4LE39 1312 aaPredicted RBP12.95□□□□□ -0.34
USP43-203ENST00000570827 KNSTRNQ9Y448 316 aa12.95□□□□□ -0.34
USP43-203ENST00000570827 GRIN2BQ13224 1484 aa12.95□□□□□ -0.34
USP43-203ENST00000570827 ROCK2O75116 1388 aaKnown RBP12.94□□□□□ -0.34
USP43-203ENST00000570827 UPF2Q9HAU5 1272 aaKnown RBP12.94□□□□□ -0.34
USP43-203ENST00000570827 FRAT2O75474 233 aaPredicted RBP12.93□□□□□ -0.34
USP43-203ENST00000570827 USP35Q9P2H5 1018 aa12.93□□□□□ -0.34
USP43-203ENST00000570827 KIF15Q9NS87 1388 aa12.93□□□□□ -0.34
USP43-203ENST00000570827 PANK3Q9H999 370 aa12.93□□□□□ -0.34
USP43-203ENST00000570827 C20orf194Q5TEA3 1177 aa12.92□□□□□ -0.34
USP43-203ENST00000570827 NCOA1Q15788 1441 aa12.92□□□□□ -0.34
USP43-203ENST00000570827 TARBP1Q13395 1621 aaKnown RBP12.92□□□□□ -0.34
USP43-203ENST00000570827 NAP1L5Q96NT1 182 aaPredicted RBP12.91□□□□□ -0.34
USP43-203ENST00000570827 NBPF1Q3BBV0 1214 aa12.91□□□□□ -0.34
USP43-203ENST00000570827 PTPN23Q9H3S7 1636 aa12.91□□□□□ -0.34
USP43-203ENST00000570827 IQGAP2Q13576 1575 aa12.9□□□□□ -0.34
USP43-203ENST00000570827 MAGI3Q5TCQ9 1506 aa12.9□□□□□ -0.34
USP43-203ENST00000570827 EPRSP07814 1512 aaKnown RBP12.9□□□□□ -0.34
USP43-203ENST00000570827 PRG4Q92954 1404 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms