RNA–Protein interactions for RNA: ENST00000570827.6

USP43-203, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 2

Gene USP43, Length 3,624 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-203ENST00000570827 NISCHQ9Y2I1 1504 aa18.79■□□□□ 0.6
USP43-203ENST00000570827 DCAF8L2P0C7V8 631 aa17.34■□□□□ 0.37
USP43-203ENST00000570827 SHROOM4Q9ULL8 1493 aa17.22■□□□□ 0.35
USP43-203ENST00000570827 SUPT5HO00267 1087 aaKnown RBP17.07■□□□□ 0.32
USP43-203ENST00000570827 PCGF6Q9BYE7 350 aa16.55■□□□□ 0.24
USP43-203ENST00000570827 EHMT2Q96KQ7 1210 aa16.47■□□□□ 0.23
USP43-203ENST00000570827 PPARGC1BQ86YN6 1023 aaKnown RBP16.32■□□□□ 0.2
USP43-203ENST00000570827 HRCP23327 699 aa16.3■□□□□ 0.2
USP43-203ENST00000570827 CHIC1Q5VXU3 224 aa16.06■□□□□ 0.16
USP43-203ENST00000570827 FAM9AQ8IZU1 332 aaPredicted RBP16.04■□□□□ 0.16
USP43-203ENST00000570827 LOC105371045A0A1W2PR82 267 aa16.03■□□□□ 0.16
USP43-203ENST00000570827 TTBK1Q5TCY1 1321 aaPredicted RBP15.83■□□□□ 0.12
USP43-203ENST00000570827 ZCCHC6Q5VYS8 1495 aaKnown RBP15.79■□□□□ 0.12
USP43-203ENST00000570827 CCDC180Q9P1Z9 1646 aa15.76■□□□□ 0.11
USP43-203ENST00000570827 MYO15BQ96JP2 1530 aa15.75■□□□□ 0.11
USP43-203ENST00000570827 TRIM26Q12899 539 aaPredicted RBP15.7■□□□□ 0.1
USP43-203ENST00000570827 TRIM41Q8WV44 630 aa15.57■□□□□ 0.08
USP43-203ENST00000570827 ZEB1P37275 1124 aaPredicted RBP15.53■□□□□ 0.08
USP43-203ENST00000570827 PELP1Q8IZL8 1130 aaKnown RBP15.51■□□□□ 0.07
USP43-203ENST00000570827 CCER1Q8TC90 406 aaPredicted RBP15.48■□□□□ 0.07
USP43-203ENST00000570827 RANGAP1P46060 587 aaPredicted RBP15.45■□□□□ 0.06
USP43-203ENST00000570827 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.38■□□□□ 0.05
USP43-203ENST00000570827 YTHDC1Q96MU7 727 aaKnown RBP15.38■□□□□ 0.05
USP43-203ENST00000570827 SCAF1Q9H7N4 1312 aaKnown RBP15.37■□□□□ 0.05
USP43-203ENST00000570827 ABCC9O60706 1549 aa15.33■□□□□ 0.05
USP43-203ENST00000570827 CENPBP07199 599 aaPredicted RBP15.29■□□□□ 0.04
USP43-203ENST00000570827 DCAF1Q9Y4B6 1507 aa15.26■□□□□ 0.03
USP43-203ENST00000570827 GTF3C3Q9Y5Q9 886 aa15.22■□□□□ 0.03
USP43-203ENST00000570827 SCRIBQ14160 1630 aa15.2■□□□□ 0.02
USP43-203ENST00000570827 DIEXFQ68CQ4 756 aaKnown RBP15.16■□□□□ 0.02
USP43-203ENST00000570827 NEUROD1Q13562 356 aa15.14■□□□□ 0.01
USP43-203ENST00000570827 ACIN1Q9UKV3 1341 aaKnown RBP15.12■□□□□ 0.01
USP43-203ENST00000570827 PABPN1Q86U42 306 aaKnown RBP eCLIP15.09■□□□□ 0.01
USP43-203ENST00000570827 UBTFP17480 764 aaKnown RBP15.04■□□□□ -0
USP43-203ENST00000570827 HNRNPUL2Q1KMD3 747 aaKnown RBP14.97□□□□□ -0.01
USP43-203ENST00000570827 RSF1Q96T23 1441 aaPredicted RBP14.93□□□□□ -0.02
USP43-203ENST00000570827 APLP2Q06481 763 aa14.89□□□□□ -0.03
USP43-203ENST00000570827 CECR2Q9BXF3 1484 aa14.86□□□□□ -0.03
USP43-203ENST00000570827 MYT1Q01538 1121 aa14.85□□□□□ -0.03
USP43-203ENST00000570827 ZNF316A6NFI3 1004 aaPredicted RBP14.78□□□□□ -0.04
USP43-203ENST00000570827 NACADO15069 1562 aa14.75□□□□□ -0.05
USP43-203ENST00000570827 RB1CC1Q8TDY2 1594 aa14.75□□□□□ -0.05
USP43-203ENST00000570827 ITGAEP38570 1179 aa14.74□□□□□ -0.05
USP43-203ENST00000570827 ATP1B4Q9UN42 357 aaPredicted RBP14.74□□□□□ -0.05
USP43-203ENST00000570827 MROH2BQ7Z745 1585 aa14.71□□□□□ -0.05
USP43-203ENST00000570827 MIER1Q8N108 512 aa14.71□□□□□ -0.05
USP43-203ENST00000570827 BCANQ96GW7 911 aa14.64□□□□□ -0.07
USP43-203ENST00000570827 WIZO95785 1651 aa14.61□□□□□ -0.07
USP43-203ENST00000570827 CSRNP3Q8WYN3 585 aa14.5□□□□□ -0.09
USP43-203ENST00000570827 BAZ1AQ9NRL2 1556 aaPredicted RBP14.43□□□□□ -0.1
USP43-203ENST00000570827 NEFLP07196 543 aa14.42□□□□□ -0.1
USP43-203ENST00000570827 CEP162Q5TB80 1403 aa14.4□□□□□ -0.1
USP43-203ENST00000570827 P3H3Q8IVL6 736 aa14.4□□□□□ -0.1
USP43-203ENST00000570827 ABCC8Q09428 1581 aa14.37□□□□□ -0.11
USP43-203ENST00000570827 ERICH6Q7L0X2 663 aa14.36□□□□□ -0.11
USP43-203ENST00000570827 CNGB1Q14028 1251 aaPredicted RBP14.35□□□□□ -0.11
USP43-203ENST00000570827 CCDC88BA6NC98 1476 aa14.35□□□□□ -0.11
USP43-203ENST00000570827 SOGA1O94964 1423 aa14.33□□□□□ -0.12
USP43-203ENST00000570827 FKBP8Q14318 412 aa14.3□□□□□ -0.12
USP43-203ENST00000570827 SMARCA4P51532 1647 aa14.3□□□□□ -0.12
USP43-203ENST00000570827 SUPT16HQ9Y5B9 1047 aaKnown RBP14.29□□□□□ -0.12
USP43-203ENST00000570827 ARID3CA6NKF2 412 aa14.28□□□□□ -0.12
USP43-203ENST00000570827 UNC13AQ9UPW8 1703 aa14.28□□□□□ -0.12
USP43-203ENST00000570827 HIRIP3Q9BW71 556 aaPredicted RBP14.27□□□□□ -0.12
USP43-203ENST00000570827 DDX10Q13206 875 aaKnown RBP14.24□□□□□ -0.13
USP43-203ENST00000570827 TOP2AP11388 1531 aaKnown RBP14.24□□□□□ -0.13
USP43-203ENST00000570827 TRIM52Q96A61 297 aa14.23□□□□□ -0.13
USP43-203ENST00000570827 FAM50AQ14320 339 aaKnown RBP14.21□□□□□ -0.13
USP43-203ENST00000570827 RUSC2Q8N2Y8 1516 aa14.21□□□□□ -0.13
USP43-203ENST00000570827 SMARCA2P51531 1590 aa14.19□□□□□ -0.14
USP43-203ENST00000570827 TNIKQ9UKE5 1360 aa14.19□□□□□ -0.14
USP43-203ENST00000570827 KCNH8Q96L42 1107 aa14.18□□□□□ -0.14
USP43-203ENST00000570827 BICRAQ9NZM4 1560 aa14.18□□□□□ -0.14
USP43-203ENST00000570827 ANP32EQ9BTT0 268 aa14.15□□□□□ -0.14
USP43-203ENST00000570827 CLIP1P30622 1438 aa14.15□□□□□ -0.14
USP43-203ENST00000570827 EIF4G1Q04637 1599 aaKnown RBP14.15□□□□□ -0.14
USP43-203ENST00000570827 TSHZ2Q9NRE2 1034 aa14.14□□□□□ -0.15
USP43-203ENST00000570827 WRNQ14191 1432 aaPredicted RBP eCLIP14.14□□□□□ -0.15
USP43-203ENST00000570827 IRX6P78412 446 aaPredicted RBP14.14□□□□□ -0.15
USP43-203ENST00000570827 EEA1Q15075 1411 aa14.11□□□□□ -0.15
USP43-203ENST00000570827 BAZ1BQ9UIG0 1483 aaKnown RBP14.11□□□□□ -0.15
USP43-203ENST00000570827 ANP32CO43423 234 aa14.08□□□□□ -0.16
USP43-203ENST00000570827 GOLGA3Q08378 1498 aa14.07□□□□□ -0.16
USP43-203ENST00000570827 ATAD2BQ9ULI0 1458 aa14.06□□□□□ -0.16
USP43-203ENST00000570827 BCL11AQ9H165 835 aa14.05□□□□□ -0.16
USP43-203ENST00000570827 POLR3GLQ9BT43 218 aa14.05□□□□□ -0.16
USP43-203ENST00000570827 KANK4Q5T7N3 995 aaPredicted RBP14.03□□□□□ -0.16
USP43-203ENST00000570827 SIN3AQ96ST3 1273 aa14.03□□□□□ -0.16
USP43-203ENST00000570827 CLSPNQ9HAW4 1339 aa14.02□□□□□ -0.17
USP43-203ENST00000570827 SENP3-EIF4A1A0A087X0R7 540 aa14□□□□□ -0.17
USP43-203ENST00000570827 HNRNPUQ00839 825 aaKnown RBP eCLIP13.98□□□□□ -0.17
USP43-203ENST00000570827 CDK11AQ9UQ88 783 aaPredicted RBP13.98□□□□□ -0.17
USP43-203ENST00000570827 RBM19Q9Y4C8 960 aaKnown RBP13.95□□□□□ -0.18
USP43-203ENST00000570827 SYNJ1O43426 1573 aa13.92□□□□□ -0.18
USP43-203ENST00000570827 CHIC2Q9UKJ5 165 aa13.91□□□□□ -0.18
USP43-203ENST00000570827 CEP164Q9UPV0 1460 aa13.9□□□□□ -0.18
USP43-203ENST00000570827 VPS8Q8N3P4 1428 aa13.9□□□□□ -0.18
USP43-203ENST00000570827 DHX57Q6P158 1386 aaKnown RBP13.89□□□□□ -0.19
USP43-203ENST00000570827 NBR1Q14596 966 aa13.89□□□□□ -0.19
USP43-203ENST00000570827 FAM9BQ8IZU0 186 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms