RNA–Protein interactions for RNA: ENST00000569603.1

LINC00556-201, long intergenic non-protein coding RNA 556, humanhuman

BASIC

Gene LINC00556, Length 412 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00556-201ENST00000569603 L3MBTL3Q96JM7 780 aaPredicted RBP11.73□□□□□ -0.53
LINC00556-201ENST00000569603 PDS5BQ9NTI5 1447 aa11.73□□□□□ -0.53
LINC00556-201ENST00000569603 RSF1Q96T23 1441 aaPredicted RBP11.7□□□□□ -0.54
LINC00556-201ENST00000569603 TRIM41Q8WV44 630 aa11.68□□□□□ -0.54
LINC00556-201ENST00000569603 WDR62O43379 1518 aa11.68□□□□□ -0.54
LINC00556-201ENST00000569603 SNPHO15079 494 aa11.67□□□□□ -0.54
LINC00556-201ENST00000569603 MRC2Q9UBG0 1479 aa11.66□□□□□ -0.54
LINC00556-201ENST00000569603 RNF25Q96BH1 459 aaPredicted RBP11.66□□□□□ -0.54
LINC00556-201ENST00000569603 CFTRP13569 1480 aa11.65□□□□□ -0.54
LINC00556-201ENST00000569603 MARVELD3Q96A59 401 aa11.65□□□□□ -0.54
LINC00556-201ENST00000569603 TMEM121BQ9BXQ6 578 aaPredicted RBP11.65□□□□□ -0.54
LINC00556-201ENST00000569603 TOP2AP11388 1531 aaKnown RBP11.65□□□□□ -0.55
LINC00556-201ENST00000569603 SLC24A1O60721 1099 aa11.64□□□□□ -0.55
LINC00556-201ENST00000569603 EFCAB3Q8N7B9 438 aa11.64□□□□□ -0.55
LINC00556-201ENST00000569603 BOLA1Q9Y3E2 137 aa11.62□□□□□ -0.55
LINC00556-201ENST00000569603 FANCD2Q9BXW9 1451 aa11.6□□□□□ -0.55
LINC00556-201ENST00000569603 CEP164Q9UPV0 1460 aa11.59□□□□□ -0.55
LINC00556-201ENST00000569603 RIOK3O14730 519 aaKnown RBP11.58□□□□□ -0.56
LINC00556-201ENST00000569603 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.56□□□□□ -0.56
LINC00556-201ENST00000569603 G3V3G9 751 aa11.56□□□□□ -0.56
LINC00556-201ENST00000569603 ZFP91Q96JP5 570 aaPredicted RBP11.56□□□□□ -0.56
LINC00556-201ENST00000569603 URB2Q14146 1524 aaKnown RBP11.55□□□□□ -0.56
LINC00556-201ENST00000569603 PRDM2Q13029 1718 aa11.54□□□□□ -0.56
LINC00556-201ENST00000569603 HOXB3P14651 431 aaPredicted RBP11.53□□□□□ -0.56
LINC00556-201ENST00000569603 EMP3P54852 163 aa11.53□□□□□ -0.56
LINC00556-201ENST00000569603 VGFO15240 615 aaPredicted RBP11.52□□□□□ -0.57
LINC00556-201ENST00000569603 MS4A4AQ96JQ5 239 aa11.51□□□□□ -0.57
LINC00556-201ENST00000569603 CCDC88BA6NC98 1476 aa11.51□□□□□ -0.57
LINC00556-201ENST00000569603 POTEB3A0JP26 581 aa11.5□□□□□ -0.57
LINC00556-201ENST00000569603 POTEBQ6S5H4 581 aa11.5□□□□□ -0.57
LINC00556-201ENST00000569603 PHF8Q9UPP1 1060 aa11.49□□□□□ -0.57
LINC00556-201ENST00000569603 MICALL2Q8IY33 904 aa11.48□□□□□ -0.57
LINC00556-201ENST00000569603 TMEM92Q6UXU6 159 aa11.47□□□□□ -0.57
LINC00556-201ENST00000569603 HS3ST6Q96QI5 342 aa11.47□□□□□ -0.57
LINC00556-201ENST00000569603 FAM205CA6NFA0 338 aa11.46□□□□□ -0.57
LINC00556-201ENST00000569603 SOX12O15370 315 aa11.46□□□□□ -0.57
LINC00556-201ENST00000569603 SPNS2Q8IVW8 549 aa11.45□□□□□ -0.58
LINC00556-201ENST00000569603 KRTAP3-3Q9BYR6 98 aa11.43□□□□□ -0.58
LINC00556-201ENST00000569603 KRTAP3-2Q9BYR7 98 aa11.43□□□□□ -0.58
LINC00556-201ENST00000569603 MMRN1Q13201 1228 aa11.42□□□□□ -0.58
LINC00556-201ENST00000569603 BCL11BQ9C0K0 894 aaPredicted RBP11.42□□□□□ -0.58
LINC00556-201ENST00000569603 TOPBP1Q92547 1522 aa11.4□□□□□ -0.58
LINC00556-201ENST00000569603 HOXB1P14653 301 aaPredicted RBP11.39□□□□□ -0.59
LINC00556-201ENST00000569603 DOK7Q18PE1 504 aa11.39□□□□□ -0.59
LINC00556-201ENST00000569603 ZNF710Q8N1W2 664 aa11.39□□□□□ -0.59
LINC00556-201ENST00000569603 ZNF608Q9ULD9 1512 aaPredicted RBP11.39□□□□□ -0.59
LINC00556-201ENST00000569603 IFT140Q96RY7 1462 aa11.38□□□□□ -0.59
LINC00556-201ENST00000569603 FBXO22Q8NEZ5 403 aa11.38□□□□□ -0.59
LINC00556-201ENST00000569603 STK24Q9Y6E0 443 aa11.37□□□□□ -0.59
LINC00556-201ENST00000569603 ECM2O94769 699 aaPredicted RBP11.36□□□□□ -0.59
LINC00556-201ENST00000569603 DNMBPQ6XZF7 1577 aa11.36□□□□□ -0.59
LINC00556-201ENST00000569603 PKD2Q13563 968 aa11.35□□□□□ -0.59
LINC00556-201ENST00000569603 ABCC8Q09428 1581 aa11.35□□□□□ -0.59
LINC00556-201ENST00000569603 TARBP1Q13395 1621 aaKnown RBP11.35□□□□□ -0.59
LINC00556-201ENST00000569603 NLRP6P59044 892 aa11.34□□□□□ -0.59
LINC00556-201ENST00000569603 MFRPQ9BY79 579 aa11.34□□□□□ -0.59
LINC00556-201ENST00000569603 RGL2O15211 777 aa11.33□□□□□ -0.6
LINC00556-201ENST00000569603 STK25O00506 426 aa11.32□□□□□ -0.6
LINC00556-201ENST00000569603 TAOK2Q9UL54 1235 aa11.32□□□□□ -0.6
LINC00556-201ENST00000569603 EIF4G3O43432 1585 aaKnown RBP11.32□□□□□ -0.6
LINC00556-201ENST00000569603 RIMBP2O15034 1052 aa11.3□□□□□ -0.6
LINC00556-201ENST00000569603 POLA1P09884 1462 aaPredicted RBP11.3□□□□□ -0.6
LINC00556-201ENST00000569603 ERBB3P21860 1342 aa11.3□□□□□ -0.6
LINC00556-201ENST00000569603 GPR153Q6NV75 609 aa11.27□□□□□ -0.61
LINC00556-201ENST00000569603 VARS2Q5ST30 1063 aaKnown RBP11.26□□□□□ -0.61
LINC00556-201ENST00000569603 RIMBP3CA6NJZ7 1639 aa11.26□□□□□ -0.61
LINC00556-201ENST00000569603 RIMBP3BA6NNM3 1639 aa11.26□□□□□ -0.61
LINC00556-201ENST00000569603 RIMBP3Q9UFD9 1639 aa11.26□□□□□ -0.61
LINC00556-201ENST00000569603 AQRO60306 1485 aaKnown RBP eCLIP11.25□□□□□ -0.61
LINC00556-201ENST00000569603 ZSWIM6Q9HCJ5 1215 aa11.25□□□□□ -0.61
LINC00556-201ENST00000569603 RAD54L2Q9Y4B4 1467 aa11.23□□□□□ -0.61
LINC00556-201ENST00000569603 ARHGEF11O15085 1522 aa11.23□□□□□ -0.61
LINC00556-201ENST00000569603 CUX1P39880 1505 aa11.23□□□□□ -0.61
LINC00556-201ENST00000569603 CHD1O14646 1710 aa11.23□□□□□ -0.61
LINC00556-201ENST00000569603 WDR97A6NE52 1622 aa11.21□□□□□ -0.61
LINC00556-201ENST00000569603 KIF3CO14782 793 aa11.21□□□□□ -0.61
LINC00556-201ENST00000569603 ARSIQ5FYB1 569 aa11.21□□□□□ -0.61
LINC00556-201ENST00000569603 KHSRPQ92945 711 aaKnown RBP eCLIP11.21□□□□□ -0.61
LINC00556-201ENST00000569603 FGD5Q6ZNL6 1462 aa11.2□□□□□ -0.62
LINC00556-201ENST00000569603 C2orf72A6NCS6 295 aa11.2□□□□□ -0.62
LINC00556-201ENST00000569603 SOGA1O94964 1423 aa11.18□□□□□ -0.62
LINC00556-201ENST00000569603 TDRD9Q8NDG6 1382 aaKnown RBP11.16□□□□□ -0.62
LINC00556-201ENST00000569603 PPP1R37O75864 691 aa11.15□□□□□ -0.62
LINC00556-201ENST00000569603 ZNF687Q8N1G0 1237 aa11.15□□□□□ -0.62
LINC00556-201ENST00000569603 CLASP1Q7Z460 1538 aa11.14□□□□□ -0.63
LINC00556-201ENST00000569603 ARAP1Q96P48 1450 aa11.14□□□□□ -0.63
LINC00556-201ENST00000569603 SNAPC4Q5SXM2 1469 aa11.13□□□□□ -0.63
LINC00556-201ENST00000569603 MAGI1Q96QZ7 1491 aaPredicted RBP11.12□□□□□ -0.63
LINC00556-201ENST00000569603 ABCA5Q8WWZ7 1642 aa11.11□□□□□ -0.63
LINC00556-201ENST00000569603 ZNF316A6NFI3 1004 aaPredicted RBP11.11□□□□□ -0.63
LINC00556-201ENST00000569603 GRIN2BQ13224 1484 aa11.11□□□□□ -0.63
LINC00556-201ENST00000569603 ABCA10Q8WWZ4 1543 aa11.1□□□□□ -0.63
LINC00556-201ENST00000569603 SYNJ2O15056 1496 aa11.09□□□□□ -0.63
LINC00556-201ENST00000569603 PBRM1Q86U86 1689 aa11.08□□□□□ -0.64
LINC00556-201ENST00000569603 NUDT7P0C024 238 aa11.08□□□□□ -0.64
LINC00556-201ENST00000569603 TMC2Q8TDI7 906 aa11.07□□□□□ -0.64
LINC00556-201ENST00000569603 GAPVD1Q14C86 1478 aa11.06□□□□□ -0.64
LINC00556-201ENST00000569603 RNF166Q96A37 237 aaPredicted RBP11.06□□□□□ -0.64
LINC00556-201ENST00000569603 SYNJ1O43426 1573 aa11.06□□□□□ -0.64
LINC00556-201ENST00000569603 BIVM-ERCC5R4GMW8 1640 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms