RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 RIMBP3BA6NNM3 1639 aa10.81□□□□□ -0.68
USP3-215ENST00000559771 RIMBP3Q9UFD9 1639 aa10.81□□□□□ -0.68
USP3-215ENST00000559771 PROM2Q8N271 834 aa10.81□□□□□ -0.68
USP3-215ENST00000559771 ABCC8Q09428 1581 aa10.81□□□□□ -0.68
USP3-215ENST00000559771 AQRO60306 1485 aaKnown RBP eCLIP10.78□□□□□ -0.682e-6■■■□□ 15.2
USP3-215ENST00000559771 POLA1P09884 1462 aaPredicted RBP10.78□□□□□ -0.68
USP3-215ENST00000559771 CHD1O14646 1710 aa10.77□□□□□ -0.69
USP3-215ENST00000559771 ARHGEF11O15085 1522 aa10.77□□□□□ -0.69
USP3-215ENST00000559771 RAD54L2Q9Y4B4 1467 aa10.74□□□□□ -0.69
USP3-215ENST00000559771 PDCD7Q8N8D1 485 aaKnown RBP10.73□□□□□ -0.69
USP3-215ENST00000559771 CUX1P39880 1505 aa10.71□□□□□ -0.69
USP3-215ENST00000559771 FGD5Q6ZNL6 1462 aa10.7□□□□□ -0.7
USP3-215ENST00000559771 NUBP1P53384 320 aa10.7□□□□□ -0.7
USP3-215ENST00000559771 SOGA1O94964 1423 aa10.69□□□□□ -0.7
USP3-215ENST00000559771 TDRD9Q8NDG6 1382 aaKnown RBP10.69□□□□□ -0.7
USP3-215ENST00000559771 MYT1LQ9UL68 1186 aa10.69□□□□□ -0.7
USP3-215ENST00000559771 WDR97A6NE52 1622 aa10.67□□□□□ -0.7
USP3-215ENST00000559771 HOXB3P14651 431 aaPredicted RBP10.67□□□□□ -0.7
USP3-215ENST00000559771 ARAP1Q96P48 1450 aa10.67□□□□□ -0.7
USP3-215ENST00000559771 CLASP1Q7Z460 1538 aa10.65□□□□□ -0.7
USP3-215ENST00000559771 MIER1Q8N108 512 aa10.65□□□□□ -0.7
USP3-215ENST00000559771 SNAPC4Q5SXM2 1469 aa10.65□□□□□ -0.7
USP3-215ENST00000559771 CYB5RLQ6IPT4 315 aa10.64□□□□□ -0.71
USP3-215ENST00000559771 C3orf67Q6ZVT6 689 aa10.63□□□□□ -0.71
USP3-215ENST00000559771 GRIN2BQ13224 1484 aa10.61□□□□□ -0.71
USP3-215ENST00000559771 MAGI1Q96QZ7 1491 aaPredicted RBP10.61□□□□□ -0.71
USP3-215ENST00000559771 PBRM1Q86U86 1689 aa10.6□□□□□ -0.71
USP3-215ENST00000559771 HOXB1P14653 301 aaPredicted RBP10.6□□□□□ -0.71
USP3-215ENST00000559771 ABCA5Q8WWZ7 1642 aa10.59□□□□□ -0.71
USP3-215ENST00000559771 SYNJ2O15056 1496 aa10.58□□□□□ -0.72
USP3-215ENST00000559771 ABCA10Q8WWZ4 1543 aa10.58□□□□□ -0.72
USP3-215ENST00000559771 SYNJ1O43426 1573 aa10.57□□□□□ -0.72
USP3-215ENST00000559771 GAPVD1Q14C86 1478 aa10.57□□□□□ -0.72
USP3-215ENST00000559771 CHMP7Q8WUX9 453 aaPredicted RBP10.55□□□□□ -0.72
USP3-215ENST00000559771 L3MBTL3Q96JM7 780 aaPredicted RBP10.55□□□□□ -0.72
USP3-215ENST00000559771 SUPT5HO00267 1087 aaKnown RBP10.54□□□□□ -0.72
USP3-215ENST00000559771 CSRNP3Q8WYN3 585 aa10.54□□□□□ -0.72
USP3-215ENST00000559771 ERBB3P21860 1342 aa10.54□□□□□ -0.72
USP3-215ENST00000559771 PLEKHG5O94827 1062 aa10.53□□□□□ -0.72
USP3-215ENST00000559771 PCDHB8Q9UN66 801 aa10.53□□□□□ -0.72
USP3-215ENST00000559771 BIVM-ERCC5R4GMW8 1640 aa10.53□□□□□ -0.72
USP3-215ENST00000559771 TOP2BQ02880 1626 aa10.51□□□□□ -0.73
USP3-215ENST00000559771 VARS2Q5ST30 1063 aaKnown RBP10.5□□□□□ -0.73
USP3-215ENST00000559771 ADAMTS12P58397 1594 aa10.5□□□□□ -0.73
USP3-215ENST00000559771 ERCC6L2Q5T890 1561 aa10.5□□□□□ -0.73
USP3-215ENST00000559771 WRNQ14191 1432 aaPredicted RBP eCLIP10.49□□□□□ -0.73
USP3-215ENST00000559771 GRIN2AQ12879 1464 aa10.49□□□□□ -0.73
USP3-215ENST00000559771 CEP170Q5SW79 1584 aa10.48□□□□□ -0.73
USP3-215ENST00000559771 ILDR1Q86SU0 546 aaPredicted RBP10.48□□□□□ -0.73
USP3-215ENST00000559771 NUP160Q12769 1436 aa10.47□□□□□ -0.73
USP3-215ENST00000559771 DPY19L2Q6NUT2 758 aa10.46□□□□□ -0.73
USP3-215ENST00000559771 ZNF687Q8N1G0 1237 aa10.46□□□□□ -0.73
USP3-215ENST00000559771 SHROOM2Q13796 1616 aa10.45□□□□□ -0.74
USP3-215ENST00000559771 PYGBP11216 843 aa10.45□□□□□ -0.74
USP3-215ENST00000559771 FAM212AQ96EL1 285 aa10.45□□□□□ -0.74
USP3-215ENST00000559771 ERICH3Q5RHP9 1530 aa10.43□□□□□ -0.74
USP3-215ENST00000559771 FHAD1B1AJZ9 1412 aa10.42□□□□□ -0.74
USP3-215ENST00000559771 PTGER2P43116 358 aa10.42□□□□□ -0.74
USP3-215ENST00000559771 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.41□□□□□ -0.742e-7■□□□□ 10.5
USP3-215ENST00000559771 PLA2G2EQ9NZK7 142 aa10.41□□□□□ -0.74
USP3-215ENST00000559771 ZNF710Q8N1W2 664 aa10.4□□□□□ -0.74
USP3-215ENST00000559771 PLCD3Q8N3E9 789 aa10.39□□□□□ -0.75
USP3-215ENST00000559771 MKRN3Q13064 507 aaKnown RBP10.37□□□□□ -0.75
USP3-215ENST00000559771 RUSC2Q8N2Y8 1516 aa10.36□□□□□ -0.75
USP3-215ENST00000559771 DOK7Q18PE1 504 aa10.35□□□□□ -0.75
USP3-215ENST00000559771 PRG4Q92954 1404 aaPredicted RBP10.34□□□□□ -0.75
USP3-215ENST00000559771 KIF13AQ9H1H9 1805 aa10.33□□□□□ -0.76
USP3-215ENST00000559771 ANKRD13DQ6ZTN6 518 aa10.32□□□□□ -0.76
USP3-215ENST00000559771 JPH4Q96JJ6 628 aa10.32□□□□□ -0.76
USP3-215ENST00000559771 ZBTB47Q9UFB7 747 aaPredicted RBP10.32□□□□□ -0.76
USP3-215ENST00000559771 BOLA1Q9Y3E2 137 aa10.31□□□□□ -0.76
USP3-215ENST00000559771 IGF1RP08069 1367 aa10.3□□□□□ -0.76
USP3-215ENST00000559771 GPR153Q6NV75 609 aa10.3□□□□□ -0.76
USP3-215ENST00000559771 ADCY10Q96PN6 1610 aa10.27□□□□□ -0.77
USP3-215ENST00000559771 DCAF8Q5TAQ9 597 aa10.27□□□□□ -0.77
USP3-215ENST00000559771 CUL7Q14999 1698 aa10.27□□□□□ -0.77
USP3-215ENST00000559771 KIAA0586Q9BVV6 1533 aa10.27□□□□□ -0.77
USP3-215ENST00000559771 GOLGA2Q08379 1002 aa10.26□□□□□ -0.77
USP3-215ENST00000559771 MAPKBP1O60336 1514 aa10.25□□□□□ -0.77
USP3-215ENST00000559771 KIF27Q86VH2 1401 aa10.24□□□□□ -0.77
USP3-215ENST00000559771 LSM11P83369 360 aaKnown RBP eCLIP10.24□□□□□ -0.77
USP3-215ENST00000559771 DIP2BQ9P265 1576 aa10.23□□□□□ -0.77
USP3-215ENST00000559771 ABCC10Q5T3U5 1492 aa10.23□□□□□ -0.77
USP3-215ENST00000559771 ZSWIM6Q9HCJ5 1215 aa10.22□□□□□ -0.77
USP3-215ENST00000559771 RIMBP2O15034 1052 aa10.21□□□□□ -0.77
USP3-215ENST00000559771 TMEM92Q6UXU6 159 aa10.21□□□□□ -0.77
USP3-215ENST00000559771 PSEN1P49768 467 aa10.2□□□□□ -0.78
USP3-215ENST00000559771 CARMIL1Q5VZK9 1371 aa10.2□□□□□ -0.78
USP3-215ENST00000559771 HCSTQ9UBK5 93 aa10.19□□□□□ -0.78
USP3-215ENST00000559771 FAM69CQ0P6D2 419 aa10.18□□□□□ -0.78
USP3-215ENST00000559771 POTEEQ6S8J3 1075 aa10.18□□□□□ -0.78
USP3-215ENST00000559771 ZNF467Q7Z7K2 595 aaPredicted RBP10.18□□□□□ -0.78
USP3-215ENST00000559771 IQGAP2Q13576 1575 aa10.16□□□□□ -0.78
USP3-215ENST00000559771 PTPRGP23470 1445 aa10.16□□□□□ -0.78
USP3-215ENST00000559771 DISP1Q96F81 1524 aa10.15□□□□□ -0.78
USP3-215ENST00000559771 TSPOAP1O95153 1857 aa10.14□□□□□ -0.79
USP3-215ENST00000559771 TNIKQ9UKE5 1360 aa10.14□□□□□ -0.79
USP3-215ENST00000559771 ABCC2Q92887 1545 aa10.13□□□□□ -0.79
USP3-215ENST00000559771 PPRC1Q5VV67 1664 aaKnown RBP10.13□□□□□ -0.79
USP3-215ENST00000559771 ARSIQ5FYB1 569 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms