RNA–Protein interactions for RNA: ENST00000556082.5

ATXN3-235, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 660 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-235ENST00000556082 ERICH3Q5RHP9 1530 aa13.06□□□□□ -0.32
ATXN3-235ENST00000556082 DNMBPQ6XZF7 1577 aa13.06□□□□□ -0.32
ATXN3-235ENST00000556082 FGD5Q6ZNL6 1462 aa13.05□□□□□ -0.32
ATXN3-235ENST00000556082 TOPBP1Q92547 1522 aa13.03□□□□□ -0.32
ATXN3-235ENST00000556082 CIZ1Q9ULV3 898 aaPredicted RBP13.03□□□□□ -0.32
ATXN3-235ENST00000556082 RAPGEF2Q9Y4G8 1499 aa13.03□□□□□ -0.32
ATXN3-235ENST00000556082 PCGF6Q9BYE7 350 aa13.02□□□□□ -0.33
ATXN3-235ENST00000556082 IGF1RP08069 1367 aa13.02□□□□□ -0.33
ATXN3-235ENST00000556082 PLCG2P16885 1265 aa13.01□□□□□ -0.33
ATXN3-235ENST00000556082 CUX2O14529 1486 aa13□□□□□ -0.33
ATXN3-235ENST00000556082 IRX5P78411 483 aaPredicted RBP12.99□□□□□ -0.33
ATXN3-235ENST00000556082 OCEL1Q9H607 264 aa12.99□□□□□ -0.33
ATXN3-235ENST00000556082 ABCA10Q8WWZ4 1543 aa12.98□□□□□ -0.33
ATXN3-235ENST00000556082 URB2Q14146 1524 aaKnown RBP12.98□□□□□ -0.33
ATXN3-235ENST00000556082 POLA1P09884 1462 aaPredicted RBP12.97□□□□□ -0.33
ATXN3-235ENST00000556082 CLIP1P30622 1438 aa12.96□□□□□ -0.34
ATXN3-235ENST00000556082 PSEN1P49768 467 aa12.95□□□□□ -0.34
ATXN3-235ENST00000556082 GOLGA2Q08379 1002 aa12.95□□□□□ -0.34
ATXN3-235ENST00000556082 PDAP1Q13442 181 aaKnown RBP12.95□□□□□ -0.34
ATXN3-235ENST00000556082 CARMIL1Q5VZK9 1371 aa12.93□□□□□ -0.34
ATXN3-235ENST00000556082 MKRN3Q13064 507 aaKnown RBP12.92□□□□□ -0.34
ATXN3-235ENST00000556082 RAD54L2Q9Y4B4 1467 aa12.91□□□□□ -0.34
ATXN3-235ENST00000556082 MRC2Q9UBG0 1479 aa12.88□□□□□ -0.35
ATXN3-235ENST00000556082 VPS8Q8N3P4 1428 aa12.88□□□□□ -0.35
ATXN3-235ENST00000556082 KIF21AQ7Z4S6 1674 aa12.86□□□□□ -0.35
ATXN3-235ENST00000556082 HRCP23327 699 aa12.84□□□□□ -0.35
ATXN3-235ENST00000556082 L3MBTL3Q96JM7 780 aaPredicted RBP12.83□□□□□ -0.36
ATXN3-235ENST00000556082 WDR97A6NE52 1622 aa12.83□□□□□ -0.36
ATXN3-235ENST00000556082 ABCA5Q8WWZ7 1642 aa12.81□□□□□ -0.36
ATXN3-235ENST00000556082 CUL7Q14999 1698 aa12.81□□□□□ -0.36
ATXN3-235ENST00000556082 GAPVD1Q14C86 1478 aa12.81□□□□□ -0.36
ATXN3-235ENST00000556082 PDCD7Q8N8D1 485 aaKnown RBP12.81□□□□□ -0.36
ATXN3-235ENST00000556082 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.81□□□□□ -0.363e-6■■□□□ 13.5
ATXN3-235ENST00000556082 TARBP1Q13395 1621 aaKnown RBP12.8□□□□□ -0.36
ATXN3-235ENST00000556082 WDR62O43379 1518 aa12.8□□□□□ -0.36
ATXN3-235ENST00000556082 POTEMA6NI47 508 aa12.8□□□□□ -0.36
ATXN3-235ENST00000556082 ILDR1Q86SU0 546 aaPredicted RBP12.8□□□□□ -0.36
ATXN3-235ENST00000556082 SLAIN1Q8ND83 568 aa12.8□□□□□ -0.36
ATXN3-235ENST00000556082 PCDH10Q9P2E7 1040 aa12.8□□□□□ -0.36
ATXN3-235ENST00000556082 TDRD9Q8NDG6 1382 aaKnown RBP12.8□□□□□ -0.36
ATXN3-235ENST00000556082 FAM163AQ96GL9 167 aaPredicted RBP12.79□□□□□ -0.36
ATXN3-235ENST00000556082 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.79□□□□□ -0.36
ATXN3-235ENST00000556082 ARAP1Q96P48 1450 aa12.78□□□□□ -0.36
ATXN3-235ENST00000556082 POTEGQ6S5H5 508 aa12.78□□□□□ -0.36
ATXN3-235ENST00000556082 ARHGAP35Q9NRY4 1499 aa12.78□□□□□ -0.36
ATXN3-235ENST00000556082 IFT140Q96RY7 1462 aa12.77□□□□□ -0.37
ATXN3-235ENST00000556082 PPARGC1BQ86YN6 1023 aaKnown RBP12.76□□□□□ -0.37
ATXN3-235ENST00000556082 CABP2Q9NPB3 220 aa12.75□□□□□ -0.37
ATXN3-235ENST00000556082 RIOK3O14730 519 aaKnown RBP12.74□□□□□ -0.37
ATXN3-235ENST00000556082 SNPHO15079 494 aa12.73□□□□□ -0.37
ATXN3-235ENST00000556082 TAOK2Q9UL54 1235 aa12.73□□□□□ -0.37
ATXN3-235ENST00000556082 ERCC6Q03468 1493 aa12.72□□□□□ -0.37
ATXN3-235ENST00000556082 RANGAP1P46060 587 aaPredicted RBP12.71□□□□□ -0.37
ATXN3-235ENST00000556082 LCE2DQ5TA82 110 aaPredicted RBP12.71□□□□□ -0.37
ATXN3-235ENST00000556082 GRIN2BQ13224 1484 aa12.71□□□□□ -0.38
ATXN3-235ENST00000556082 FHAD1B1AJZ9 1412 aa12.71□□□□□ -0.38
ATXN3-235ENST00000556082 VGFO15240 615 aaPredicted RBP12.7□□□□□ -0.38
ATXN3-235ENST00000556082 C3orf67Q6ZVT6 689 aa12.7□□□□□ -0.38
ATXN3-235ENST00000556082 EFCAB5A4FU69 1503 aa12.68□□□□□ -0.38
ATXN3-235ENST00000556082 MAP3K1Q13233 1512 aa12.68□□□□□ -0.38
ATXN3-235ENST00000556082 AQRO60306 1485 aaKnown RBP eCLIP12.68□□□□□ -0.38
ATXN3-235ENST00000556082 ZEB1P37275 1124 aaPredicted RBP12.68□□□□□ -0.38
ATXN3-235ENST00000556082 THOC2Q8NI27 1593 aaKnown RBP12.66□□□□□ -0.38
ATXN3-235ENST00000556082 G3V3G9 751 aa12.66□□□□□ -0.38
ATXN3-235ENST00000556082 SOX12O15370 315 aa12.65□□□□□ -0.38
ATXN3-235ENST00000556082 RNF25Q96BH1 459 aaPredicted RBP12.64□□□□□ -0.39
ATXN3-235ENST00000556082 ZNF608Q9ULD9 1512 aaPredicted RBP12.63□□□□□ -0.39
ATXN3-235ENST00000556082 CTTNBP2Q8WZ74 1663 aa12.62□□□□□ -0.39
ATXN3-235ENST00000556082 ADAMTS12P58397 1594 aa12.62□□□□□ -0.39
ATXN3-235ENST00000556082 EFCAB3Q8N7B9 438 aa12.62□□□□□ -0.39
ATXN3-235ENST00000556082 TMEM121BQ9BXQ6 578 aaPredicted RBP12.62□□□□□ -0.39
ATXN3-235ENST00000556082 BOLA1Q9Y3E2 137 aa12.62□□□□□ -0.39
ATXN3-235ENST00000556082 PBRM1Q86U86 1689 aa12.61□□□□□ -0.39
ATXN3-235ENST00000556082 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.6□□□□□ -0.39
ATXN3-235ENST00000556082 ST18O60284 1047 aa12.6□□□□□ -0.39
ATXN3-235ENST00000556082 KANK4Q5T7N3 995 aaPredicted RBP12.6□□□□□ -0.39
ATXN3-235ENST00000556082 DPY19L2Q6NUT2 758 aa12.6□□□□□ -0.39
ATXN3-235ENST00000556082 ZFP91Q96JP5 570 aaPredicted RBP12.6□□□□□ -0.39
ATXN3-235ENST00000556082 FMN1Q68DA7 1419 aa12.6□□□□□ -0.39
ATXN3-235ENST00000556082 CASKIN1Q8WXD9 1431 aa12.59□□□□□ -0.39
ATXN3-235ENST00000556082 SAMD9Q5K651 1589 aa12.59□□□□□ -0.39
ATXN3-235ENST00000556082 MAGI1Q96QZ7 1491 aaPredicted RBP12.59□□□□□ -0.39
ATXN3-235ENST00000556082 TTBK1Q5TCY1 1321 aaPredicted RBP12.58□□□□□ -0.4
ATXN3-235ENST00000556082 FYCO1Q9BQS8 1478 aa12.57□□□□□ -0.4
ATXN3-235ENST00000556082 FHOD3Q2V2M9 1422 aa12.56□□□□□ -0.4
ATXN3-235ENST00000556082 ECM2O94769 699 aaPredicted RBP12.55□□□□□ -0.4
ATXN3-235ENST00000556082 KIAA0586Q9BVV6 1533 aa12.55□□□□□ -0.4
ATXN3-235ENST00000556082 EIF4G3O43432 1585 aaKnown RBP12.55□□□□□ -0.4
ATXN3-235ENST00000556082 TIAM1Q13009 1591 aa12.55□□□□□ -0.4
ATXN3-235ENST00000556082 SNAPC4Q5SXM2 1469 aa12.54□□□□□ -0.4
ATXN3-235ENST00000556082 P3H3Q8IVL6 736 aa12.54□□□□□ -0.4
ATXN3-235ENST00000556082 PLSCR2Q9NRY7 297 aa12.54□□□□□ -0.4
ATXN3-235ENST00000556082 RRBP1Q9P2E9 1410 aaKnown RBP12.54□□□□□ -0.4
ATXN3-235ENST00000556082 SYNJ2O15056 1496 aa12.53□□□□□ -0.4
ATXN3-235ENST00000556082 GRIN2AQ12879 1464 aa12.53□□□□□ -0.4
ATXN3-235ENST00000556082 LRRC9Q6ZRR7 1453 aa12.53□□□□□ -0.4
ATXN3-235ENST00000556082 UGGT2Q9NYU1 1516 aa12.52□□□□□ -0.4
ATXN3-235ENST00000556082 IQGAP2Q13576 1575 aa12.52□□□□□ -0.4
ATXN3-235ENST00000556082 PCF11O94913 1555 aaKnown RBP12.5□□□□□ -0.41
ATXN3-235ENST00000556082 PKD2Q13563 968 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms