RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 POLA1P09884 1462 aaPredicted RBP13.99□□□□□ -0.17
VPS29-203ENST00000546588 ABCA10Q8WWZ4 1543 aa13.98□□□□□ -0.17
VPS29-203ENST00000546588 KIF21BO75037 1637 aa13.97□□□□□ -0.17
VPS29-203ENST00000546588 IRX5P78411 483 aaPredicted RBP13.97□□□□□ -0.17
VPS29-203ENST00000546588 HAP1P54257 671 aaPredicted RBP13.96□□□□□ -0.17
VPS29-203ENST00000546588 DCAF8Q5TAQ9 597 aa13.96□□□□□ -0.17
VPS29-203ENST00000546588 ABCA5Q8WWZ7 1642 aa13.95□□□□□ -0.18
VPS29-203ENST00000546588 PYGBP11216 843 aa13.95□□□□□ -0.18
VPS29-203ENST00000546588 SOGA1O94964 1423 aa13.93□□□□□ -0.18
VPS29-203ENST00000546588 ERICH3Q5RHP9 1530 aa13.9□□□□□ -0.18
VPS29-203ENST00000546588 RUSC2Q8N2Y8 1516 aa13.9□□□□□ -0.19
VPS29-203ENST00000546588 CUX2O14529 1486 aa13.89□□□□□ -0.19
VPS29-203ENST00000546588 PLCG2P16885 1265 aa13.89□□□□□ -0.19
VPS29-203ENST00000546588 PKD2Q13563 968 aa13.89□□□□□ -0.19
VPS29-203ENST00000546588 KLHL34Q8N239 644 aa13.89□□□□□ -0.19
VPS29-203ENST00000546588 PCDHB8Q9UN66 801 aa13.89□□□□□ -0.19
VPS29-203ENST00000546588 CUL7Q14999 1698 aa13.88□□□□□ -0.19
VPS29-203ENST00000546588 KIF27Q86VH2 1401 aa13.88□□□□□ -0.19
VPS29-203ENST00000546588 ERCC6Q03468 1493 aa13.87□□□□□ -0.19
VPS29-203ENST00000546588 PBRM1Q86U86 1689 aa13.87□□□□□ -0.19
VPS29-203ENST00000546588 OCEL1Q9H607 264 aa13.85□□□□□ -0.19
VPS29-203ENST00000546588 PRXQ9BXM0 1461 aa13.85□□□□□ -0.19
VPS29-203ENST00000546588 SLAIN1Q8ND83 568 aa13.84□□□□□ -0.19
VPS29-203ENST00000546588 IFT140Q96RY7 1462 aa13.84□□□□□ -0.19
VPS29-203ENST00000546588 RAD54L2Q9Y4B4 1467 aa13.82□□□□□ -0.2
VPS29-203ENST00000546588 GSE1Q14687 1217 aa13.82□□□□□ -0.2
VPS29-203ENST00000546588 CHRM1P11229 460 aaPredicted RBP13.81□□□□□ -0.2
VPS29-203ENST00000546588 GOLGA3Q08378 1498 aa13.8□□□□□ -0.2
VPS29-203ENST00000546588 SPOCK2Q92563 424 aa13.79□□□□□ -0.2
VPS29-203ENST00000546588 EIF4G3O43432 1585 aaKnown RBP13.79□□□□□ -0.2
VPS29-203ENST00000546588 ST18O60284 1047 aa13.77□□□□□ -0.21
VPS29-203ENST00000546588 ZNF467Q7Z7K2 595 aaPredicted RBP13.77□□□□□ -0.21
VPS29-203ENST00000546588 GAPVD1Q14C86 1478 aa13.74□□□□□ -0.21
VPS29-203ENST00000546588 ECM2O94769 699 aaPredicted RBP13.74□□□□□ -0.21
VPS29-203ENST00000546588 PDCD7Q8N8D1 485 aaKnown RBP13.74□□□□□ -0.21
VPS29-203ENST00000546588 CTTNBP2Q8WZ74 1663 aa13.74□□□□□ -0.21
VPS29-203ENST00000546588 ADAMTS12P58397 1594 aa13.74□□□□□ -0.21
VPS29-203ENST00000546588 IGF1RP08069 1367 aa13.73□□□□□ -0.21
VPS29-203ENST00000546588 RAPGEF2Q9Y4G8 1499 aa13.71□□□□□ -0.21
VPS29-203ENST00000546588 TNIKQ9UKE5 1360 aa13.71□□□□□ -0.22
VPS29-203ENST00000546588 CDAN1Q8IWY9 1227 aa13.7□□□□□ -0.22
VPS29-203ENST00000546588 GRIN2BQ13224 1484 aa13.68□□□□□ -0.22
VPS29-203ENST00000546588 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.68□□□□□ -0.22
VPS29-203ENST00000546588 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.67□□□□□ -0.22
VPS29-203ENST00000546588 ZNF608Q9ULD9 1512 aaPredicted RBP13.67□□□□□ -0.22
VPS29-203ENST00000546588 ILDR1Q86SU0 546 aaPredicted RBP13.66□□□□□ -0.22
VPS29-203ENST00000546588 MAGI1Q96QZ7 1491 aaPredicted RBP13.66□□□□□ -0.22
VPS29-203ENST00000546588 PSEN1P49768 467 aa13.65□□□□□ -0.22
VPS29-203ENST00000546588 CARMIL1Q5VZK9 1371 aa13.63□□□□□ -0.23
VPS29-203ENST00000546588 FAM9AQ8IZU1 332 aaPredicted RBP13.63□□□□□ -0.23
VPS29-203ENST00000546588 TMEM121BQ9BXQ6 578 aaPredicted RBP13.63□□□□□ -0.23
VPS29-203ENST00000546588 TDRD9Q8NDG6 1382 aaKnown RBP13.62□□□□□ -0.23
VPS29-203ENST00000546588 MKRN3Q13064 507 aaKnown RBP13.62□□□□□ -0.23
VPS29-203ENST00000546588 VSIG10Q8N0Z9 540 aa13.62□□□□□ -0.23
VPS29-203ENST00000546588 BCANQ96GW7 911 aa13.62□□□□□ -0.23
VPS29-203ENST00000546588 FHAD1B1AJZ9 1412 aa13.62□□□□□ -0.23
VPS29-203ENST00000546588 BBXQ8WY36 941 aaPredicted RBP13.61□□□□□ -0.23
VPS29-203ENST00000546588 AQRO60306 1485 aaKnown RBP eCLIP13.61□□□□□ -0.232e-9■■■■■ 38.2
VPS29-203ENST00000546588 LOC105371045A0A1W2PR82 267 aa13.6□□□□□ -0.23
VPS29-203ENST00000546588 SNPHO15079 494 aa13.6□□□□□ -0.23
VPS29-203ENST00000546588 PAXIP1Q6ZW49 1069 aaPredicted RBP13.6□□□□□ -0.23
VPS29-203ENST00000546588 CFAP44Q96MT7 982 aa13.6□□□□□ -0.23
VPS29-203ENST00000546588 CEP162Q5TB80 1403 aa13.58□□□□□ -0.24
VPS29-203ENST00000546588 GOLGA2Q08379 1002 aa13.58□□□□□ -0.24
VPS29-203ENST00000546588 PDAP1Q13442 181 aaKnown RBP13.58□□□□□ -0.24
VPS29-203ENST00000546588 L3MBTL3Q96JM7 780 aaPredicted RBP13.58□□□□□ -0.24
VPS29-203ENST00000546588 SNAPC4Q5SXM2 1469 aa13.57□□□□□ -0.24
VPS29-203ENST00000546588 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.57□□□□□ -0.24
VPS29-203ENST00000546588 SYNJ2O15056 1496 aa13.56□□□□□ -0.24
VPS29-203ENST00000546588 EFCAB5A4FU69 1503 aa13.55□□□□□ -0.24
VPS29-203ENST00000546588 SAMD9Q5K651 1589 aa13.55□□□□□ -0.24
VPS29-203ENST00000546588 RGL2O15211 777 aa13.55□□□□□ -0.24
VPS29-203ENST00000546588 CIZ1Q9ULV3 898 aaPredicted RBP13.54□□□□□ -0.24
VPS29-203ENST00000546588 GRIN2AQ12879 1464 aa13.54□□□□□ -0.24
VPS29-203ENST00000546588 CHD1O14646 1710 aa13.53□□□□□ -0.24
VPS29-203ENST00000546588 C3orf67Q6ZVT6 689 aa13.53□□□□□ -0.24
VPS29-203ENST00000546588 IQGAP2Q13576 1575 aa13.51□□□□□ -0.25
VPS29-203ENST00000546588 NUP160Q12769 1436 aa13.49□□□□□ -0.25
VPS29-203ENST00000546588 DPY19L2Q6NUT2 758 aa13.49□□□□□ -0.25
VPS29-203ENST00000546588 CEP170Q5SW79 1584 aa13.49□□□□□ -0.25
VPS29-203ENST00000546588 CLIP1P30622 1438 aa13.48□□□□□ -0.25
VPS29-203ENST00000546588 PRKCSHP14314 528 aaPredicted RBP13.48□□□□□ -0.25
VPS29-203ENST00000546588 UGGT2Q9NYU1 1516 aa13.48□□□□□ -0.25
VPS29-203ENST00000546588 MARVELD3Q96A59 401 aa13.47□□□□□ -0.25
VPS29-203ENST00000546588 CABP2Q9NPB3 220 aa13.47□□□□□ -0.25
VPS29-203ENST00000546588 ARAP1Q96P48 1450 aa13.47□□□□□ -0.25
VPS29-203ENST00000546588 ARHGAP35Q9NRY4 1499 aa13.47□□□□□ -0.25
VPS29-203ENST00000546588 KIAA0586Q9BVV6 1533 aa13.45□□□□□ -0.26
VPS29-203ENST00000546588 KDM2AQ9Y2K7 1162 aa13.45□□□□□ -0.26
VPS29-203ENST00000546588 SHROOM2Q13796 1616 aa13.45□□□□□ -0.26
VPS29-203ENST00000546588 CHGAP10645 457 aaKnown RBP13.43□□□□□ -0.26
VPS29-203ENST00000546588 UBTFP17480 764 aaKnown RBP13.43□□□□□ -0.26
VPS29-203ENST00000546588 VPS8Q8N3P4 1428 aa13.43□□□□□ -0.26
VPS29-203ENST00000546588 SPRYD3Q8NCJ5 442 aa13.43□□□□□ -0.26
VPS29-203ENST00000546588 TAOK2Q9UL54 1235 aa13.43□□□□□ -0.26
VPS29-203ENST00000546588 MYT1Q01538 1121 aa13.42□□□□□ -0.26
VPS29-203ENST00000546588 SPNS2Q8IVW8 549 aa13.41□□□□□ -0.26
VPS29-203ENST00000546588 KIAA0556O60303 1618 aa13.4□□□□□ -0.26
VPS29-203ENST00000546588 BOLA1Q9Y3E2 137 aa13.4□□□□□ -0.26
VPS29-203ENST00000546588 CLASP1Q7Z460 1538 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms