RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 FGD1P98174 961 aa10.15□□□□□ -0.78
HDAC9-227ENST00000523867 FGD5Q6ZNL6 1462 aa10.15□□□□□ -0.78
HDAC9-227ENST00000523867 P3H3Q8IVL6 736 aa10.15□□□□□ -0.79
HDAC9-227ENST00000523867 CCDC136Q96JN2 1154 aa10.13□□□□□ -0.79
HDAC9-227ENST00000523867 CLASP1Q7Z460 1538 aa10.12□□□□□ -0.79
HDAC9-227ENST00000523867 POLA1P09884 1462 aaPredicted RBP10.11□□□□□ -0.79
HDAC9-227ENST00000523867 MAGI1Q96QZ7 1491 aaPredicted RBP10.11□□□□□ -0.79
HDAC9-227ENST00000523867 PPP1R15AO75807 674 aaPredicted RBP10.11□□□□□ -0.79
HDAC9-227ENST00000523867 PCF11O94913 1555 aaKnown RBP10.11□□□□□ -0.79
HDAC9-227ENST00000523867 CFAP43Q8NDM7 1665 aa10.1□□□□□ -0.79
HDAC9-227ENST00000523867 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.1□□□□□ -0.79
HDAC9-227ENST00000523867 IRX6P78412 446 aaPredicted RBP10.09□□□□□ -0.79
HDAC9-227ENST00000523867 AQRO60306 1485 aaKnown RBP eCLIP10.09□□□□□ -0.79
HDAC9-227ENST00000523867 HSP90B1P14625 803 aaKnown RBP10.09□□□□□ -0.79
HDAC9-227ENST00000523867 FHOD3Q2V2M9 1422 aa10.09□□□□□ -0.79
HDAC9-227ENST00000523867 CYB5RLQ6IPT4 315 aa10.08□□□□□ -0.8
HDAC9-227ENST00000523867 HIRIP3Q9BW71 556 aaPredicted RBP10.08□□□□□ -0.8
HDAC9-227ENST00000523867 ANP32CO43423 234 aa10.08□□□□□ -0.8
HDAC9-227ENST00000523867 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.08□□□□□ -0.8
HDAC9-227ENST00000523867 FYCO1Q9BQS8 1478 aa10.07□□□□□ -0.8
HDAC9-227ENST00000523867 CCER2I3L3R5 266 aa10.07□□□□□ -0.8
HDAC9-227ENST00000523867 CASKIN1Q8WXD9 1431 aa10.07□□□□□ -0.8
HDAC9-227ENST00000523867 POLR3GLQ9BT43 218 aa10.06□□□□□ -0.8
HDAC9-227ENST00000523867 GRIN2BQ13224 1484 aa10.06□□□□□ -0.8
HDAC9-227ENST00000523867 EFCAB5A4FU69 1503 aa10.05□□□□□ -0.8
HDAC9-227ENST00000523867 TONSLQ96HA7 1378 aa10.05□□□□□ -0.8
HDAC9-227ENST00000523867 SYNJ2O15056 1496 aa10.05□□□□□ -0.8
HDAC9-227ENST00000523867 SNAPC4Q5SXM2 1469 aa10.04□□□□□ -0.8
HDAC9-227ENST00000523867 TRHP20396 242 aaPredicted RBP10.03□□□□□ -0.8
HDAC9-227ENST00000523867 TRIM52Q96A61 297 aa10.03□□□□□ -0.8
HDAC9-227ENST00000523867 RAD54L2Q9Y4B4 1467 aa10.03□□□□□ -0.8
HDAC9-227ENST00000523867 FGD6Q6ZV73 1430 aa10.03□□□□□ -0.8
HDAC9-227ENST00000523867 FMN1Q68DA7 1419 aa10.03□□□□□ -0.8
HDAC9-227ENST00000523867 ABCA10Q8WWZ4 1543 aa10.02□□□□□ -0.81
HDAC9-227ENST00000523867 C11orf95C9JLR9 678 aaPredicted RBP10.02□□□□□ -0.81
HDAC9-227ENST00000523867 NOP58Q9Y2X3 529 aaKnown RBP10.02□□□□□ -0.81
HDAC9-227ENST00000523867 MTUS2Q5JR59 1369 aa10.01□□□□□ -0.81
HDAC9-227ENST00000523867 CCDC18Q5T9S5 1454 aa10.01□□□□□ -0.81
HDAC9-227ENST00000523867 PAXIP1Q6ZW49 1069 aaPredicted RBP10.01□□□□□ -0.81
HDAC9-227ENST00000523867 ARID3AQ99856 593 aa10.01□□□□□ -0.81
HDAC9-227ENST00000523867 CCDC9Q9Y3X0 531 aaKnown RBP10.01□□□□□ -0.81
HDAC9-227ENST00000523867 UACAQ9BZF9 1416 aa10□□□□□ -0.81
HDAC9-227ENST00000523867 GLIPR1L2Q4G1C9 344 aa10□□□□□ -0.81
HDAC9-227ENST00000523867 CHMP7Q8WUX9 453 aaPredicted RBP10□□□□□ -0.81
HDAC9-227ENST00000523867 ZBTB4Q9P1Z0 1013 aaPredicted RBP10□□□□□ -0.81
HDAC9-227ENST00000523867 HFM1A2PYH4 1435 aa10□□□□□ -0.81
HDAC9-227ENST00000523867 RTL5Q5HYW3 569 aaPredicted RBP9.99□□□□□ -0.81
HDAC9-227ENST00000523867 IL27Q8NEV9 243 aa9.99□□□□□ -0.81
HDAC9-227ENST00000523867 CUL7Q14999 1698 aa9.99□□□□□ -0.81
HDAC9-227ENST00000523867 NECTIN2Q92692 538 aa9.99□□□□□ -0.81
HDAC9-227ENST00000523867 PBRM1Q86U86 1689 aa9.98□□□□□ -0.81
HDAC9-227ENST00000523867 TDRD9Q8NDG6 1382 aaKnown RBP9.98□□□□□ -0.81
HDAC9-227ENST00000523867 CTTNBP2Q8WZ74 1663 aa9.98□□□□□ -0.81
HDAC9-227ENST00000523867 PTPRKQ15262 1439 aa9.97□□□□□ -0.81
HDAC9-227ENST00000523867 GAPVD1Q14C86 1478 aa9.96□□□□□ -0.81
HDAC9-227ENST00000523867 ABCA5Q8WWZ7 1642 aa9.96□□□□□ -0.81
HDAC9-227ENST00000523867 PTPN23Q9H3S7 1636 aa9.96□□□□□ -0.81
HDAC9-227ENST00000523867 A0A0U1RQG5 324 aaPredicted RBP9.95□□□□□ -0.82
HDAC9-227ENST00000523867 NAIPQ13075 1403 aa9.95□□□□□ -0.82
HDAC9-227ENST00000523867 MYOM3Q5VTT5 1437 aa9.95□□□□□ -0.82
HDAC9-227ENST00000523867 PUS7Q96PZ0 661 aaKnown RBP9.95□□□□□ -0.82
HDAC9-227ENST00000523867 RSPH6AQ9H0K4 717 aa9.95□□□□□ -0.82
HDAC9-227ENST00000523867 NCOA2Q15596 1464 aa9.95□□□□□ -0.82
HDAC9-227ENST00000523867 WASHC2AQ641Q2 1341 aa9.94□□□□□ -0.82
HDAC9-227ENST00000523867 HMGB1P09429 215 aaKnown RBP9.93□□□□□ -0.82
HDAC9-227ENST00000523867 RSPH4AQ5TD94 716 aa9.93□□□□□ -0.82
HDAC9-227ENST00000523867 USP35Q9P2H5 1018 aa9.93□□□□□ -0.82
HDAC9-227ENST00000523867 HNRNPUQ00839 825 aaKnown RBP eCLIP9.92□□□□□ -0.82
HDAC9-227ENST00000523867 NBR1Q14596 966 aa9.92□□□□□ -0.82
HDAC9-227ENST00000523867 WASHC2CQ9Y4E1 1318 aa9.92□□□□□ -0.82
HDAC9-227ENST00000523867 ZNF428Q96B54 188 aa9.92□□□□□ -0.82
HDAC9-227ENST00000523867 BRPF3Q9ULD4 1205 aa9.91□□□□□ -0.82
HDAC9-227ENST00000523867 SAMD9Q5K651 1589 aa9.91□□□□□ -0.82
HDAC9-227ENST00000523867 SHROOM2Q13796 1616 aa9.91□□□□□ -0.82
HDAC9-227ENST00000523867 SUPT6HQ7KZ85 1726 aaKnown RBP9.91□□□□□ -0.82
HDAC9-227ENST00000523867 RRP7BPQ9NSQ0 103 aa9.91□□□□□ -0.82
HDAC9-227ENST00000523867 NUP160Q12769 1436 aa9.9□□□□□ -0.82
HDAC9-227ENST00000523867 EHBP1L1Q8N3D4 1523 aa9.9□□□□□ -0.82
HDAC9-227ENST00000523867 GRIN2AQ12879 1464 aa9.9□□□□□ -0.82
HDAC9-227ENST00000523867 HSPA5P11021 654 aaKnown RBP9.89□□□□□ -0.83
HDAC9-227ENST00000523867 CHIC2Q9UKJ5 165 aa9.89□□□□□ -0.83
HDAC9-227ENST00000523867 ADAMTS12P58397 1594 aa9.89□□□□□ -0.83
HDAC9-227ENST00000523867 KDM5BQ9UGL1 1544 aa9.89□□□□□ -0.83
HDAC9-227ENST00000523867 LRRIQ1Q96JM4 1722 aa9.89□□□□□ -0.83
HDAC9-227ENST00000523867 BCCIPQ9P287 314 aaKnown RBP eCLIP9.88□□□□□ -0.83
HDAC9-227ENST00000523867 EIF4G2P78344 907 aaKnown RBP eCLIP9.88□□□□□ -0.83
HDAC9-227ENST00000523867 UGGT2Q9NYU1 1516 aa9.88□□□□□ -0.83
HDAC9-227ENST00000523867 AAMPQ13685 434 aa9.87□□□□□ -0.83
HDAC9-227ENST00000523867 PPP4R2Q9NY27 417 aa9.87□□□□□ -0.83
HDAC9-227ENST00000523867 CEP170Q5SW79 1584 aa9.87□□□□□ -0.83
HDAC9-227ENST00000523867 IPO9Q96P70 1041 aaKnown RBP9.86□□□□□ -0.83
HDAC9-227ENST00000523867 PAK3O75914 559 aaPredicted RBP9.86□□□□□ -0.83
HDAC9-227ENST00000523867 TCOF1Q13428 1488 aaKnown RBP9.85□□□□□ -0.83
HDAC9-227ENST00000523867 MPHOSPH9Q99550 1183 aa9.85□□□□□ -0.83
HDAC9-227ENST00000523867 MAGI3Q5TCQ9 1506 aa9.84□□□□□ -0.83
HDAC9-227ENST00000523867 HECW1Q76N89 1606 aa9.84□□□□□ -0.83
HDAC9-227ENST00000523867 AKNAQ7Z591 1439 aa9.83□□□□□ -0.84
HDAC9-227ENST00000523867 CNTLNQ9NXG0 1405 aa9.83□□□□□ -0.84
HDAC9-227ENST00000523867 DENND4BO75064 1496 aaPredicted RBP9.83□□□□□ -0.84
HDAC9-227ENST00000523867 L3MBTL2Q969R5 705 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms