RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 NISCHQ9Y2I1 1504 aa14.3□□□□□ -0.12
HDAC9-227ENST00000523867 SLC24A1O60721 1099 aa13.73□□□□□ -0.21
HDAC9-227ENST00000523867 CHIC1Q5VXU3 224 aa13.62□□□□□ -0.23
HDAC9-227ENST00000523867 AEBP2Q6ZN18 517 aaPredicted RBP13.41□□□□□ -0.26
HDAC9-227ENST00000523867 PELP1Q8IZL8 1130 aaKnown RBP12.72□□□□□ -0.37
HDAC9-227ENST00000523867 CCDC180Q9P1Z9 1646 aa12.63□□□□□ -0.39
HDAC9-227ENST00000523867 ABCC9O60706 1549 aa12.54□□□□□ -0.4
HDAC9-227ENST00000523867 DAXXQ9UER7 740 aaPredicted RBP12.52□□□□□ -0.4
HDAC9-227ENST00000523867 EHMT2Q96KQ7 1210 aa12.51□□□□□ -0.41
HDAC9-227ENST00000523867 MYT1Q01538 1121 aa12.47□□□□□ -0.41
HDAC9-227ENST00000523867 PLPPR3Q6T4P5 718 aa12.42□□□□□ -0.42
HDAC9-227ENST00000523867 PRKCSHP14314 528 aaPredicted RBP12.38□□□□□ -0.43
HDAC9-227ENST00000523867 PHF23Q9BUL5 403 aaPredicted RBP12.37□□□□□ -0.43
HDAC9-227ENST00000523867 SHROOM4Q9ULL8 1493 aa12.34□□□□□ -0.43
HDAC9-227ENST00000523867 RTN4Q9NQC3 1192 aaKnown RBP12.25□□□□□ -0.45
HDAC9-227ENST00000523867 APLP2Q06481 763 aa12.22□□□□□ -0.45
HDAC9-227ENST00000523867 SUPT5HO00267 1087 aaKnown RBP12.2□□□□□ -0.46
HDAC9-227ENST00000523867 HRCP23327 699 aa12.2□□□□□ -0.46
HDAC9-227ENST00000523867 TTBK1Q5TCY1 1321 aaPredicted RBP12.19□□□□□ -0.46
HDAC9-227ENST00000523867 NCBP3Q53F19 620 aaKnown RBP12.14□□□□□ -0.47
HDAC9-227ENST00000523867 ZCCHC6Q5VYS8 1495 aaKnown RBP12.11□□□□□ -0.47
HDAC9-227ENST00000523867 RB1CC1Q8TDY2 1594 aa12.05□□□□□ -0.48
HDAC9-227ENST00000523867 ERICH6Q7L0X2 663 aa12.02□□□□□ -0.49
HDAC9-227ENST00000523867 NACADO15069 1562 aa11.96□□□□□ -0.5
HDAC9-227ENST00000523867 DCAF8L2P0C7V8 631 aa11.9□□□□□ -0.5
HDAC9-227ENST00000523867 MYO15BQ96JP2 1530 aa11.87□□□□□ -0.51
HDAC9-227ENST00000523867 DNAJC5BQ9UF47 199 aa11.84□□□□□ -0.51
HDAC9-227ENST00000523867 PPARGC1BQ86YN6 1023 aaKnown RBP11.79□□□□□ -0.52
HDAC9-227ENST00000523867 TIMELESSQ9UNS1 1208 aa11.74□□□□□ -0.53
HDAC9-227ENST00000523867 PCGF6Q9BYE7 350 aa11.72□□□□□ -0.53
HDAC9-227ENST00000523867 DCAF1Q9Y4B6 1507 aa11.72□□□□□ -0.53
HDAC9-227ENST00000523867 SCAF1Q9H7N4 1312 aaKnown RBP11.7□□□□□ -0.54
HDAC9-227ENST00000523867 AMER1Q5JTC6 1135 aaPredicted RBP11.69□□□□□ -0.54
HDAC9-227ENST00000523867 KCNA4P22459 653 aa11.69□□□□□ -0.54
HDAC9-227ENST00000523867 UNC13AQ9UPW8 1703 aa11.66□□□□□ -0.54
HDAC9-227ENST00000523867 ARXQ96QS3 562 aa11.66□□□□□ -0.54
HDAC9-227ENST00000523867 BICRAQ9NZM4 1560 aa11.62□□□□□ -0.55
HDAC9-227ENST00000523867 LOC105371045A0A1W2PR82 267 aa11.57□□□□□ -0.56
HDAC9-227ENST00000523867 PABPN1Q86U42 306 aaKnown RBP eCLIP11.56□□□□□ -0.56
HDAC9-227ENST00000523867 EIF5BO60841 1220 aaKnown RBP11.53□□□□□ -0.56
HDAC9-227ENST00000523867 TULP1O00294 542 aaPredicted RBP11.52□□□□□ -0.57
HDAC9-227ENST00000523867 KLHL34Q8N239 644 aa11.51□□□□□ -0.57
HDAC9-227ENST00000523867 CSRNP3Q8WYN3 585 aa11.49□□□□□ -0.57
HDAC9-227ENST00000523867 TRIM26Q12899 539 aaPredicted RBP11.46□□□□□ -0.58
HDAC9-227ENST00000523867 ZEB1P37275 1124 aaPredicted RBP11.44□□□□□ -0.58
HDAC9-227ENST00000523867 RANGAP1P46060 587 aaPredicted RBP11.41□□□□□ -0.58
HDAC9-227ENST00000523867 CC2D2AQ9P2K1 1620 aa11.4□□□□□ -0.58
HDAC9-227ENST00000523867 CECR2Q9BXF3 1484 aa11.39□□□□□ -0.59
HDAC9-227ENST00000523867 RSF1Q96T23 1441 aaPredicted RBP11.39□□□□□ -0.59
HDAC9-227ENST00000523867 EIF4G1Q04637 1599 aaKnown RBP11.36□□□□□ -0.59
HDAC9-227ENST00000523867 ACIN1Q9UKV3 1341 aaKnown RBP11.36□□□□□ -0.59
HDAC9-227ENST00000523867 TAOK2Q9UL54 1235 aa11.36□□□□□ -0.59
HDAC9-227ENST00000523867 SCRIBQ14160 1630 aa11.36□□□□□ -0.59
HDAC9-227ENST00000523867 PLEKHG5O94827 1062 aa11.36□□□□□ -0.59
HDAC9-227ENST00000523867 TRIM41Q8WV44 630 aa11.36□□□□□ -0.59
HDAC9-227ENST00000523867 HOMEZQ8IX15 550 aa11.3□□□□□ -0.6
HDAC9-227ENST00000523867 CENPBP07199 599 aaPredicted RBP11.27□□□□□ -0.61
HDAC9-227ENST00000523867 FAM9AQ8IZU1 332 aaPredicted RBP11.27□□□□□ -0.61
HDAC9-227ENST00000523867 PODXL2Q9NZ53 605 aa11.26□□□□□ -0.61
HDAC9-227ENST00000523867 BCL11AQ9H165 835 aa11.25□□□□□ -0.61
HDAC9-227ENST00000523867 TPRNQ4KMQ1 711 aa11.21□□□□□ -0.61
HDAC9-227ENST00000523867 NEUROD1Q13562 356 aa11.2□□□□□ -0.62
HDAC9-227ENST00000523867 GTF3C3Q9Y5Q9 886 aa11.2□□□□□ -0.62
HDAC9-227ENST00000523867 DNAJC5Q9H3Z4 198 aa11.16□□□□□ -0.62
HDAC9-227ENST00000523867 ADRA2BP18089 450 aa11.13□□□□□ -0.63
HDAC9-227ENST00000523867 MROH2BQ7Z745 1585 aa11.12□□□□□ -0.63
HDAC9-227ENST00000523867 CUX2O14529 1486 aa11.1□□□□□ -0.63
HDAC9-227ENST00000523867 WIZO95785 1651 aa11.06□□□□□ -0.64
HDAC9-227ENST00000523867 BCANQ96GW7 911 aa11.06□□□□□ -0.64
HDAC9-227ENST00000523867 ANP32EQ9BTT0 268 aa11.02□□□□□ -0.65
HDAC9-227ENST00000523867 BAZ1AQ9NRL2 1556 aaPredicted RBP11.01□□□□□ -0.65
HDAC9-227ENST00000523867 NCAPD3P42695 1498 aa11□□□□□ -0.65
HDAC9-227ENST00000523867 NPM2Q86SE8 214 aaKnown RBP10.98□□□□□ -0.65
HDAC9-227ENST00000523867 CCER1Q8TC90 406 aaPredicted RBP10.97□□□□□ -0.65
HDAC9-227ENST00000523867 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.97□□□□□ -0.65
HDAC9-227ENST00000523867 HMGXB3Q12766 1538 aa10.94□□□□□ -0.66
HDAC9-227ENST00000523867 SMARCA2P51531 1590 aa10.92□□□□□ -0.66
HDAC9-227ENST00000523867 ERCC6Q03468 1493 aa10.91□□□□□ -0.66
HDAC9-227ENST00000523867 TOP2AP11388 1531 aaKnown RBP10.9□□□□□ -0.67
HDAC9-227ENST00000523867 C14orf37Q86TY3 774 aa10.89□□□□□ -0.67
HDAC9-227ENST00000523867 ABCC8Q09428 1581 aa10.88□□□□□ -0.67
HDAC9-227ENST00000523867 CCDC88BA6NC98 1476 aa10.88□□□□□ -0.67
HDAC9-227ENST00000523867 ATAD2BQ9ULI0 1458 aa10.88□□□□□ -0.67
HDAC9-227ENST00000523867 WRNQ14191 1432 aaPredicted RBP eCLIP10.87□□□□□ -0.67
HDAC9-227ENST00000523867 CLSPNQ9HAW4 1339 aa10.87□□□□□ -0.67
HDAC9-227ENST00000523867 PLCB2Q00722 1185 aa10.87□□□□□ -0.67
HDAC9-227ENST00000523867 DIEXFQ68CQ4 756 aaKnown RBP10.86□□□□□ -0.67
HDAC9-227ENST00000523867 CEP162Q5TB80 1403 aa10.86□□□□□ -0.67
HDAC9-227ENST00000523867 SMARCA4P51532 1647 aa10.85□□□□□ -0.67
HDAC9-227ENST00000523867 TNIKQ9UKE5 1360 aa10.83□□□□□ -0.68
HDAC9-227ENST00000523867 SOGA1O94964 1423 aa10.83□□□□□ -0.68
HDAC9-227ENST00000523867 PEG3Q9GZU2 1588 aa10.83□□□□□ -0.68
HDAC9-227ENST00000523867 HAP1P54257 671 aaPredicted RBP10.81□□□□□ -0.68
HDAC9-227ENST00000523867 LAMC3Q9Y6N6 1575 aa10.81□□□□□ -0.68
HDAC9-227ENST00000523867 EEA1Q15075 1411 aa10.8□□□□□ -0.68
HDAC9-227ENST00000523867 UBTFP17480 764 aaKnown RBP10.8□□□□□ -0.68
HDAC9-227ENST00000523867 SENP3Q9H4L4 574 aaPredicted RBP10.78□□□□□ -0.68
HDAC9-227ENST00000523867 THOC2Q8NI27 1593 aaKnown RBP10.77□□□□□ -0.69
HDAC9-227ENST00000523867 BAZ1BQ9UIG0 1483 aaKnown RBP10.77□□□□□ -0.69
HDAC9-227ENST00000523867 TMEM132AQ24JP5 1023 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 122.9 ms