RNA–Protein interactions for RNA: ENST00000522658.5

PABPC1-220, Transcript of poly(A) binding protein cytoplasmic 1, humanhuman

TSL 2

Gene PABPC1, Length 736 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PABPC1-220ENST00000522658 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.69□□□□□ -0.54
PABPC1-220ENST00000522658 TOP2AP11388 1531 aaKnown RBP11.69□□□□□ -0.54
PABPC1-220ENST00000522658 CFTRP13569 1480 aa11.69□□□□□ -0.54
PABPC1-220ENST00000522658 ST18O60284 1047 aa11.68□□□□□ -0.54
PABPC1-220ENST00000522658 L3MBTL3Q96JM7 780 aaPredicted RBP11.66□□□□□ -0.54
PABPC1-220ENST00000522658 CABP2Q9NPB3 220 aa11.65□□□□□ -0.54
PABPC1-220ENST00000522658 URB2Q14146 1524 aaKnown RBP11.63□□□□□ -0.55
PABPC1-220ENST00000522658 PRDM2Q13029 1718 aa11.63□□□□□ -0.55
PABPC1-220ENST00000522658 RSF1Q96T23 1441 aaPredicted RBP11.62□□□□□ -0.55
PABPC1-220ENST00000522658 DPY19L2Q6NUT2 758 aa11.62□□□□□ -0.55
PABPC1-220ENST00000522658 C3orf67Q6ZVT6 689 aa11.59□□□□□ -0.55
PABPC1-220ENST00000522658 IFT140Q96RY7 1462 aa11.58□□□□□ -0.56
PABPC1-220ENST00000522658 SNPHO15079 494 aa11.58□□□□□ -0.56
PABPC1-220ENST00000522658 RNF25Q96BH1 459 aaPredicted RBP11.58□□□□□ -0.56
PABPC1-220ENST00000522658 CDAN1Q8IWY9 1227 aa11.57□□□□□ -0.56
PABPC1-220ENST00000522658 TMEM121BQ9BXQ6 578 aaPredicted RBP11.56□□□□□ -0.56
PABPC1-220ENST00000522658 RIMBP3CA6NJZ7 1639 aa11.55□□□□□ -0.56
PABPC1-220ENST00000522658 RIMBP3BA6NNM3 1639 aa11.55□□□□□ -0.56
PABPC1-220ENST00000522658 RIMBP3Q9UFD9 1639 aa11.55□□□□□ -0.56
PABPC1-220ENST00000522658 EFCAB3Q8N7B9 438 aa11.54□□□□□ -0.56
PABPC1-220ENST00000522658 RIOK3O14730 519 aaKnown RBP11.53□□□□□ -0.56
PABPC1-220ENST00000522658 BOLA1Q9Y3E2 137 aa11.53□□□□□ -0.56
PABPC1-220ENST00000522658 ABCC8Q09428 1581 aa11.53□□□□□ -0.56
PABPC1-220ENST00000522658 ARHGEF11O15085 1522 aa11.51□□□□□ -0.57
PABPC1-220ENST00000522658 TOPBP1Q92547 1522 aa11.51□□□□□ -0.57
PABPC1-220ENST00000522658 ZNF608Q9ULD9 1512 aaPredicted RBP11.51□□□□□ -0.57
PABPC1-220ENST00000522658 EIF4G3O43432 1585 aaKnown RBP11.51□□□□□ -0.57
PABPC1-220ENST00000522658 CCDC88BA6NC98 1476 aa11.5□□□□□ -0.57
PABPC1-220ENST00000522658 DNMBPQ6XZF7 1577 aa11.49□□□□□ -0.57
PABPC1-220ENST00000522658 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.48□□□□□ -0.57
PABPC1-220ENST00000522658 ZFP91Q96JP5 570 aaPredicted RBP11.48□□□□□ -0.57
PABPC1-220ENST00000522658 VGFO15240 615 aaPredicted RBP11.47□□□□□ -0.57
PABPC1-220ENST00000522658 MARVELD3Q96A59 401 aa11.46□□□□□ -0.57
PABPC1-220ENST00000522658 G3V3G9 751 aa11.44□□□□□ -0.58
PABPC1-220ENST00000522658 SOX12O15370 315 aa11.44□□□□□ -0.58
PABPC1-220ENST00000522658 CHD1O14646 1710 aa11.43□□□□□ -0.58
PABPC1-220ENST00000522658 CYB5RLQ6IPT4 315 aa11.43□□□□□ -0.58
PABPC1-220ENST00000522658 MS4A4AQ96JQ5 239 aa11.43□□□□□ -0.58
PABPC1-220ENST00000522658 HOXB3P14651 431 aaPredicted RBP11.41□□□□□ -0.58
PABPC1-220ENST00000522658 AQRO60306 1485 aaKnown RBP eCLIP11.4□□□□□ -0.581e-6■■■■■ 32.8
PABPC1-220ENST00000522658 MICALL2Q8IY33 904 aa11.39□□□□□ -0.59
PABPC1-220ENST00000522658 PHF8Q9UPP1 1060 aa11.39□□□□□ -0.59
PABPC1-220ENST00000522658 POLA1P09884 1462 aaPredicted RBP11.38□□□□□ -0.59
PABPC1-220ENST00000522658 TARBP1Q13395 1621 aaKnown RBP11.38□□□□□ -0.59
PABPC1-220ENST00000522658 POTEB3A0JP26 581 aa11.37□□□□□ -0.59
PABPC1-220ENST00000522658 EMP3P54852 163 aa11.37□□□□□ -0.59
PABPC1-220ENST00000522658 POTEBQ6S5H4 581 aa11.37□□□□□ -0.59
PABPC1-220ENST00000522658 TMEM92Q6UXU6 159 aa11.37□□□□□ -0.59
PABPC1-220ENST00000522658 ARAP1Q96P48 1450 aa11.37□□□□□ -0.59
PABPC1-220ENST00000522658 WDR97A6NE52 1622 aa11.35□□□□□ -0.59
PABPC1-220ENST00000522658 SOGA1O94964 1423 aa11.35□□□□□ -0.59
PABPC1-220ENST00000522658 SYNJ1O43426 1573 aa11.34□□□□□ -0.59
PABPC1-220ENST00000522658 SNAPC4Q5SXM2 1469 aa11.34□□□□□ -0.59
PABPC1-220ENST00000522658 FBXO22Q8NEZ5 403 aa11.33□□□□□ -0.6
PABPC1-220ENST00000522658 CHMP7Q8WUX9 453 aaPredicted RBP11.33□□□□□ -0.6
PABPC1-220ENST00000522658 HS3ST6Q96QI5 342 aa11.33□□□□□ -0.6
PABPC1-220ENST00000522658 BCL11BQ9C0K0 894 aaPredicted RBP11.33□□□□□ -0.6
PABPC1-220ENST00000522658 RAD54L2Q9Y4B4 1467 aa11.32□□□□□ -0.6
PABPC1-220ENST00000522658 PKD2Q13563 968 aa11.32□□□□□ -0.6
PABPC1-220ENST00000522658 TDRD9Q8NDG6 1382 aaKnown RBP11.31□□□□□ -0.6
PABPC1-220ENST00000522658 HOXB1P14653 301 aaPredicted RBP11.31□□□□□ -0.6
PABPC1-220ENST00000522658 TAOK2Q9UL54 1235 aa11.31□□□□□ -0.6
PABPC1-220ENST00000522658 FGD5Q6ZNL6 1462 aa11.31□□□□□ -0.6
PABPC1-220ENST00000522658 MAGI1Q96QZ7 1491 aaPredicted RBP11.31□□□□□ -0.6
PABPC1-220ENST00000522658 FAM205CA6NFA0 338 aa11.3□□□□□ -0.6
PABPC1-220ENST00000522658 ECM2O94769 699 aaPredicted RBP11.3□□□□□ -0.6
PABPC1-220ENST00000522658 SPNS2Q8IVW8 549 aa11.3□□□□□ -0.6
PABPC1-220ENST00000522658 DOK7Q18PE1 504 aa11.29□□□□□ -0.6
PABPC1-220ENST00000522658 GRIN2BQ13224 1484 aa11.29□□□□□ -0.6
PABPC1-220ENST00000522658 NLRP6P59044 892 aa11.28□□□□□ -0.6
PABPC1-220ENST00000522658 MFRPQ9BY79 579 aa11.28□□□□□ -0.6
PABPC1-220ENST00000522658 KRTAP3-3Q9BYR6 98 aa11.28□□□□□ -0.6
PABPC1-220ENST00000522658 KRTAP3-2Q9BYR7 98 aa11.28□□□□□ -0.6
PABPC1-220ENST00000522658 STK24Q9Y6E0 443 aa11.28□□□□□ -0.6
PABPC1-220ENST00000522658 CLASP1Q7Z460 1538 aa11.27□□□□□ -0.61
PABPC1-220ENST00000522658 RGL2O15211 777 aa11.26□□□□□ -0.61
PABPC1-220ENST00000522658 MMRN1Q13201 1228 aa11.26□□□□□ -0.61
PABPC1-220ENST00000522658 ZNF710Q8N1W2 664 aa11.26□□□□□ -0.61
PABPC1-220ENST00000522658 SYNJ2O15056 1496 aa11.25□□□□□ -0.61
PABPC1-220ENST00000522658 STK25O00506 426 aa11.25□□□□□ -0.61
PABPC1-220ENST00000522658 PBRM1Q86U86 1689 aa11.24□□□□□ -0.61
PABPC1-220ENST00000522658 CUX1P39880 1505 aa11.24□□□□□ -0.61
PABPC1-220ENST00000522658 GAPVD1Q14C86 1478 aa11.22□□□□□ -0.61
PABPC1-220ENST00000522658 ZSWIM6Q9HCJ5 1215 aa11.21□□□□□ -0.61
PABPC1-220ENST00000522658 RIMBP2O15034 1052 aa11.2□□□□□ -0.62
PABPC1-220ENST00000522658 GPR153Q6NV75 609 aa11.2□□□□□ -0.62
PABPC1-220ENST00000522658 ERBB3P21860 1342 aa11.16□□□□□ -0.62
PABPC1-220ENST00000522658 ABCA10Q8WWZ4 1543 aa11.16□□□□□ -0.62
PABPC1-220ENST00000522658 KIF3CO14782 793 aa11.16□□□□□ -0.62
PABPC1-220ENST00000522658 ABCA5Q8WWZ7 1642 aa11.15□□□□□ -0.62
PABPC1-220ENST00000522658 WRNQ14191 1432 aaPredicted RBP eCLIP11.13□□□□□ -0.63
PABPC1-220ENST00000522658 GRIN2AQ12879 1464 aa11.12□□□□□ -0.63
PABPC1-220ENST00000522658 VARS2Q5ST30 1063 aaKnown RBP11.12□□□□□ -0.63
PABPC1-220ENST00000522658 ADAMTS12P58397 1594 aa11.11□□□□□ -0.63
PABPC1-220ENST00000522658 C2orf72A6NCS6 295 aa11.1□□□□□ -0.63
PABPC1-220ENST00000522658 SUPT5HO00267 1087 aaKnown RBP11.09□□□□□ -0.63
PABPC1-220ENST00000522658 ARSIQ5FYB1 569 aa11.09□□□□□ -0.63
PABPC1-220ENST00000522658 PPP1R37O75864 691 aa11.08□□□□□ -0.64
PABPC1-220ENST00000522658 ZNF687Q8N1G0 1237 aa11.08□□□□□ -0.64
PABPC1-220ENST00000522658 CEP170Q5SW79 1584 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms