RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 FANCIQ9NVI1 1328 aa18.02■□□□□ 0.48
SYNPO-205ENST00000522122 GLIPR1L2Q4G1C9 344 aa18■□□□□ 0.47
SYNPO-205ENST00000522122 PLPPR3Q6T4P5 718 aa18■□□□□ 0.47
SYNPO-205ENST00000522122 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.99■□□□□ 0.47
SYNPO-205ENST00000522122 NUDCQ9Y266 331 aa17.99■□□□□ 0.47
SYNPO-205ENST00000522122 ZBED9Q6R2W3 1325 aa17.99■□□□□ 0.47
SYNPO-205ENST00000522122 DEKP35659 375 aaKnown RBP17.98■□□□□ 0.47
SYNPO-205ENST00000522122 CNTLNQ9NXG0 1405 aa17.98■□□□□ 0.47
SYNPO-205ENST00000522122 NCOA2Q15596 1464 aa17.98■□□□□ 0.47
SYNPO-205ENST00000522122 RAD54L2Q9Y4B4 1467 aa17.97■□□□□ 0.47
SYNPO-205ENST00000522122 DCAF11Q8TEB1 546 aa17.97■□□□□ 0.47
SYNPO-205ENST00000522122 NEUROD2Q15784 382 aa17.96■□□□□ 0.47
SYNPO-205ENST00000522122 SENP3Q9H4L4 574 aaPredicted RBP17.96■□□□□ 0.47
SYNPO-205ENST00000522122 PRKRIP1Q9H875 184 aaPredicted RBP17.96■□□□□ 0.47
SYNPO-205ENST00000522122 CC2D1BQ5T0F9 858 aaKnown RBP17.96■□□□□ 0.47
SYNPO-205ENST00000522122 PCF11O94913 1555 aaKnown RBP17.96■□□□□ 0.47
SYNPO-205ENST00000522122 ROCK2O75116 1388 aaKnown RBP17.95■□□□□ 0.46
SYNPO-205ENST00000522122 RGS3P49796 1198 aa17.94■□□□□ 0.46
SYNPO-205ENST00000522122 PKD2Q13563 968 aa17.94■□□□□ 0.46
SYNPO-205ENST00000522122 EHBP1L1Q8N3D4 1523 aa17.93■□□□□ 0.46
SYNPO-205ENST00000522122 HFM1A2PYH4 1435 aa17.93■□□□□ 0.46
SYNPO-205ENST00000522122 RALBP1Q15311 655 aa17.93■□□□□ 0.46
SYNPO-205ENST00000522122 FTSJ3Q8IY81 847 aaKnown RBP17.93■□□□□ 0.46
SYNPO-205ENST00000522122 LAS1LQ9Y4W2 734 aaKnown RBP17.93■□□□□ 0.46
SYNPO-205ENST00000522122 ANKRD30AQ9BXX3 1397 aa17.92■□□□□ 0.46
SYNPO-205ENST00000522122 TMF1P82094 1093 aa17.92■□□□□ 0.46
SYNPO-205ENST00000522122 KTN1Q86UP2 1357 aaKnown RBP17.91■□□□□ 0.46
SYNPO-205ENST00000522122 CCDC7Q96M83 1385 aa17.91■□□□□ 0.46
SYNPO-205ENST00000522122 GOLGA6L22H0YM25 854 aa17.91■□□□□ 0.46
SYNPO-205ENST00000522122 GAPVD1Q14C86 1478 aa17.89■□□□□ 0.46
SYNPO-205ENST00000522122 AQRO60306 1485 aaKnown RBP eCLIP17.89■□□□□ 0.45
SYNPO-205ENST00000522122 MAPKBP1O60336 1514 aa17.89■□□□□ 0.45
SYNPO-205ENST00000522122 FRAT1Q92837 279 aaPredicted RBP17.89■□□□□ 0.45
SYNPO-205ENST00000522122 TRIM44Q96DX7 344 aaPredicted RBP17.88■□□□□ 0.45
SYNPO-205ENST00000522122 WASHC2AQ641Q2 1341 aa17.87■□□□□ 0.45
SYNPO-205ENST00000522122 MAPK8IP3Q9UPT6 1336 aa17.87■□□□□ 0.45
SYNPO-205ENST00000522122 KIF15Q9NS87 1388 aa17.86■□□□□ 0.45
SYNPO-205ENST00000522122 TCERG1O14776 1098 aaKnown RBP17.86■□□□□ 0.45
SYNPO-205ENST00000522122 IPO9Q96P70 1041 aaKnown RBP17.86■□□□□ 0.45
SYNPO-205ENST00000522122 SUPT6HQ7KZ85 1726 aaKnown RBP17.85■□□□□ 0.45
SYNPO-205ENST00000522122 RCAN3Q9UKA8 241 aa17.85■□□□□ 0.45
SYNPO-205ENST00000522122 TNNT2P45379 298 aaPredicted RBP17.84■□□□□ 0.45
SYNPO-205ENST00000522122 NUP155O75694 1391 aa17.83■□□□□ 0.44
SYNPO-205ENST00000522122 DNMBPQ6XZF7 1577 aa17.83■□□□□ 0.44
SYNPO-205ENST00000522122 CARMIL2Q6F5E8 1435 aa17.83■□□□□ 0.44
SYNPO-205ENST00000522122 NCLP19338 710 aaKnown RBP17.82■□□□□ 0.44
SYNPO-205ENST00000522122 CUL7Q14999 1698 aa17.82■□□□□ 0.44
SYNPO-205ENST00000522122 USP47Q96K76 1375 aa17.82■□□□□ 0.44
SYNPO-205ENST00000522122 MS4A1P11836 297 aa17.81■□□□□ 0.44
SYNPO-205ENST00000522122 MYBBP1AQ9BQG0 1328 aaKnown RBP17.8■□□□□ 0.44
SYNPO-205ENST00000522122 PDE3BQ13370 1112 aa17.79■□□□□ 0.44
SYNPO-205ENST00000522122 KIF7Q2M1P5 1343 aa17.79■□□□□ 0.44
SYNPO-205ENST00000522122 ARID4BQ4LE39 1312 aaPredicted RBP17.79■□□□□ 0.44
SYNPO-205ENST00000522122 HECW1Q76N89 1606 aa17.79■□□□□ 0.44
SYNPO-205ENST00000522122 TOPBP1Q92547 1522 aa17.78■□□□□ 0.44
SYNPO-205ENST00000522122 POGKQ9P215 609 aa17.78■□□□□ 0.44
SYNPO-205ENST00000522122 ABCA10Q8WWZ4 1543 aa17.77■□□□□ 0.44
SYNPO-205ENST00000522122 POLA1P09884 1462 aaPredicted RBP17.77■□□□□ 0.44
SYNPO-205ENST00000522122 U2SURPO15042 1029 aaKnown RBP17.76■□□□□ 0.43
SYNPO-205ENST00000522122 CASC1Q6TDU7 716 aa17.76■□□□□ 0.43
SYNPO-205ENST00000522122 C14orf37Q86TY3 774 aa17.76■□□□□ 0.43
SYNPO-205ENST00000522122 CHMP4BQ9H444 224 aaKnown RBP17.76■□□□□ 0.43
SYNPO-205ENST00000522122 CC2D2AQ9P2K1 1620 aa17.76■□□□□ 0.43
SYNPO-205ENST00000522122 NAIPQ13075 1403 aa17.76■□□□□ 0.43
SYNPO-205ENST00000522122 MIA2Q96PC5 1412 aa17.75■□□□□ 0.43
SYNPO-205ENST00000522122 NLRP13Q86W25 1043 aa17.75■□□□□ 0.43
SYNPO-205ENST00000522122 CFAP43Q8NDM7 1665 aa17.75■□□□□ 0.43
SYNPO-205ENST00000522122 PTPN23Q9H3S7 1636 aa17.73■□□□□ 0.43
SYNPO-205ENST00000522122 ERCC6Q03468 1493 aa17.73■□□□□ 0.43
SYNPO-205ENST00000522122 ZBTB7CA1YPR0 619 aa17.72■□□□□ 0.43
SYNPO-205ENST00000522122 RTN4Q9NQC3 1192 aaKnown RBP17.72■□□□□ 0.43
SYNPO-205ENST00000522122 KANK1Q14678 1352 aa17.71■□□□□ 0.43
SYNPO-205ENST00000522122 RRP1P56182 461 aaKnown RBP17.71■□□□□ 0.43
SYNPO-205ENST00000522122 PNNQ9H307 717 aaKnown RBP17.71■□□□□ 0.43
SYNPO-205ENST00000522122 MORC1Q86VD1 984 aa17.71■□□□□ 0.43
SYNPO-205ENST00000522122 PLEKHG5O94827 1062 aa17.68■□□□□ 0.42
SYNPO-205ENST00000522122 PRDM2Q13029 1718 aa17.67■□□□□ 0.42
SYNPO-205ENST00000522122 PTMAP06454 111 aaKnown RBP17.67■□□□□ 0.42
SYNPO-205ENST00000522122 HSP90AB1P08238 724 aaKnown RBP17.67■□□□□ 0.42
SYNPO-205ENST00000522122 ST20-MTHFSA0A0A6YYL1 179 aa17.66■□□□□ 0.42
SYNPO-205ENST00000522122 SMG6Q86US8 1419 aaKnown RBP17.65■□□□□ 0.42
SYNPO-205ENST00000522122 USP35Q9P2H5 1018 aa17.63■□□□□ 0.41
SYNPO-205ENST00000522122 DAPK1P53355 1430 aa17.63■□□□□ 0.41
SYNPO-205ENST00000522122 SRPK2P78362 688 aaKnown RBP17.63■□□□□ 0.41
SYNPO-205ENST00000522122 CCDC144AA2RUR9 1427 aa17.63■□□□□ 0.41
SYNPO-205ENST00000522122 THOC2Q8NI27 1593 aaKnown RBP17.62■□□□□ 0.41
SYNPO-205ENST00000522122 HSCBQ8IWL3 235 aa17.62■□□□□ 0.41
SYNPO-205ENST00000522122 RSPH4AQ5TD94 716 aa17.62■□□□□ 0.41
SYNPO-205ENST00000522122 EXOC6Q8TAG9 804 aa17.62■□□□□ 0.41
SYNPO-205ENST00000522122 BRD4O60885 1362 aaPredicted RBP17.62■□□□□ 0.41
SYNPO-205ENST00000522122 PDE4AP27815 886 aa17.62■□□□□ 0.41
SYNPO-205ENST00000522122 ROCK1Q13464 1354 aa17.61■□□□□ 0.41
SYNPO-205ENST00000522122 ZNF644Q9H582 1327 aaPredicted RBP17.6■□□□□ 0.41
SYNPO-205ENST00000522122 NESP48681 1621 aa17.59■□□□□ 0.41
SYNPO-205ENST00000522122 NAP1L5Q96NT1 182 aaPredicted RBP17.59■□□□□ 0.41
SYNPO-205ENST00000522122 HNRNPMP52272 730 aaKnown RBP eCLIP17.59■□□□□ 0.41
SYNPO-205ENST00000522122 EPRSP07814 1512 aaKnown RBP17.59■□□□□ 0.41
SYNPO-205ENST00000522122 NBPF8Q3BBV2 869 aa17.59■□□□□ 0.41
SYNPO-205ENST00000522122 EIF3AQ14152 1382 aaKnown RBP17.58■□□□□ 0.41
SYNPO-205ENST00000522122 KIAA1107Q9UPP5 1409 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms